Accessory Genome Dynamics and Structural Variation of <italic toggle='yes'>Shigella</italic> from Persistent Infections

No abstract is available for this paper.

• Publication year

  2021

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Not labeled

• Identifiers

  No identifiers available.

• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Mann–Whitney U Test

  2022cited by this paper
• Genomic Drivers of Multidrug-Resistant Shigella Affecting Vulnerable Patient Populations in the United States and Abroad

  2021cited by this paper
• Evidence for reinfection and persistent carriage of Shigella species in adult males reporting domestically-acquired infection in England.

  2020cited by this paper
• A Multifactorial Approach for Surveillance of Shigella spp. and Entero-Invasive Escherichia coli Is Important for Detecting (Inter)national Clusters

  2020cited by this paper
• SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

  2019cited by this paper
• Shigellosis

  2019cited by this paper
• Commensal E. coli are a reservoir for the transfer of XDR plasmids into epidemic fluoroquinolone-resistant Shigella sonnei

  2019cited by this paper
• Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates

  2019cited by this paper
• Co-circulation of multidrug-resistant Shigella among men who have sex with men, Australia.

  2019cited by this paper
• Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center

  2019cited by this paper
• Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

  2019cited by this paper
• Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

  2018influential reference
• Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel

  2018cited by this paper
• Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions

  2018cited by this paper
• An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men

  2018cited by this paper
• Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses

  2017cited by this paper
• Whole-Genome Sequencing for National Surveillance of Shigella flexneri

  2017influential reference
• ISEScan: automated identification of insertion sequence elements in prokaryotic genomes

  2017cited by this paper
• Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study.

  2016cited by this paper
• SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

  2016cited by this paper
• Elevated Risk for Antimicrobial Drug–Resistant Shigella Infection among Men Who Have Sex with Men, United States, 2011–2015

  2016cited by this paper
• PHASTER: a better, faster version of the PHAST phage search tool

  2016cited by this paper
• Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

  2016cited by this paper
• Within-host evolution of bacterial pathogens

  2016cited by this paper
• Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

  2016cited by this paper
• Use of whole-genome sequencing for the public health surveillance of Shigella sonnei in England and Wales, 2015.

  2016cited by this paper
• Roary: rapid large-scale prokaryote pan genome analysis

  2015cited by this paper
• Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study.

  2015influential reference
• Possible transfer of plasmid mediated third generation cephalosporin resistance between Escherichia coli and Shigella sonnei in the human gut.

  2015cited by this paper
• Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri

  2015cited by this paper
• Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing

  2015cited by this paper
• Sex, drugs and smart phone applications: findings from semistructured interviews with men who have sex with men diagnosed with Shigella flexneri 3a in England and Wales

  2015cited by this paper
• Urinary tract infections: epidemiology, mechanisms of infection and treatment options

  2015cited by this paper
• Intensified shigellosis epidemic associated with sexual transmission in men who have sex with men--Shigella flexneri and S. sonnei in England, 2004 to end of February 2015.

  2015cited by this paper
• Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

  2014cited by this paper
• Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis

  2014cited by this paper
• The road to drug resistance in Mycobacterium tuberculosis

  2014cited by this paper
• Recent trends in the epidemiology of shigellosis in Israel

  2014cited by this paper
• Shigella Isolates From the Global Enteric Multicenter Study Inform Vaccine Development

  2014cited by this paper
• BBMap: A Fast, Accurate, Splice-Aware Aligner

  2014cited by this paper
• Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

  2014cited by this paper
• Trimmomatic: a flexible trimmer for Illumina sequence data

  2014cited by this paper
• Outer membrane protein A (OmpA) from Shigella flexneri 2a: a promising subunit vaccine candidate.

  2013cited by this paper
• High rates of quinolone-resistant strains of Shigella sonnei in HIV-infected MSM

  2013cited by this paper
• Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

  2013cited by this paper
• Progress and pitfalls in Shigella vaccine research

  2013cited by this paper
• Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment.

  2012cited by this paper
• Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations

  2012cited by this paper
• Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

  2012cited by this paper
• Outer Membrane Protein A (OmpA): A New Player in Shigella flexneri Protrusion Formation and Inter-Cellular Spreading

  2012cited by this paper
• Candidate

  2012cited by this paper
• Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

  2011cited by this paper
• Ciprofloxacin-Resistant Shigella sonnei among Men Who Have Sex with Men, Canada, 2010

  2011cited by this paper
• Evolutionary dynamics of bacteria in a human host environment

  2011cited by this paper
• FIGfams: yet another set of protein families

  2009cited by this paper
• Circos: an information aesthetic for comparative genomics.

  2009cited by this paper
• The RAST Server: Rapid Annotations using Subsystems Technology

  2008cited by this paper
• The organization of the bacterial genome.

  2008cited by this paper
• Dynamics of Pseudomonas aeruginosa genome evolution

  2008cited by this paper
• Clinical trials of Shigella vaccines: two steps forward and one step back on a long, hard road

  2007cited by this paper
• Case-control study of shigellosis in San Francisco: the role of sexual transmission and HIV infection.

  2007cited by this paper
• Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery

  2005cited by this paper
• ACT: the Artemis comparison tool

  2005cited by this paper
• BIOINFORMATICS APPLICATIONS NOTE

  2001cited by this paper
• Genes Lost and Genes Found: Evolution of Bacterial Pathogenesis and Symbiosis

  2001cited by this paper
• Identification of regions of Ail required for the invasion and serum resistance phenotypes

  2001cited by this paper
• HIV infection as a risk factor for shigellosis.

  1999cited by this paper
• Dynamics of IS-related genetic rearrangements in resting Escherichia coli K-12.

  1995cited by this paper
• Epidemic spread of Shigella sonnei shigellosis and evidence for development of immunity among children attending day-care centers in a communal settlement (Kibbutz)

  1994cited by this paper
• Insertion sequence-related genetic variation in resting Escherichia coli K-12.

  1994cited by this paper
• A bacterial virulence determinant encoded by lysogenic coliphage λ

  1990cited by this paper
• Chronic Shigella flexneri infection preceding development of acquired immunodeficiency syndrome

  1989cited by this paper
• BIOINFORMATICS APPLICATIONS NOTE

  year unknowncited by this paper

• No citing papers are available for this paper.