Coenzyme binding in F420-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Structure

• Publication date

  2004-03-01

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1016/J.STR.2004.02.010PMID 15016352
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Crystal structure of Escherichia coli alkanesulfonate monooxygenase SsuD.

  2002cited by this paper
• npd gene functions of Rhodococcus (opacus) erythropolis HL PM-1 in the initial steps of 2,4,6-trinitrophenol degradation.

  2002cited by this paper
• Substructure solution with SHELXD.

  2002cited by this paper
• Use of Transposon Tn5367 Mutagenesis and a Nitroimidazopyran-Based Selection System To Demonstrate a Requirement for fbiA and fbiB in Coenzyme F420 Biosynthesis by Mycobacterium bovis BCG

  2001cited by this paper
• Modeling of the bacterial luciferase‐flavin mononucleotide complex combining flexible docking with structure‐activity data

  2001cited by this paper
• A new software routine that automates the fitting of protein X-ray crystallographic electron-density maps.

  2001cited by this paper
• Structure of coenzyme F(420) dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea.

  2000cited by this paper
• A small-molecule nitroimidazopyran drug candidate for the treatment of tuberculosis

  2000cited by this paper
• The Escherichia coli ssuEADCB Gene Cluster Is Required for the Utilization of Sulfur from Aliphatic Sulfonates and Is Regulated by the Transcriptional Activator Cbl*

  1999cited by this paper
• The structure and properties of methylenetetrahydrofolate reductase from Escherichia coli suggest how folate ameliorates human hyperhomocysteinemia

  1999cited by this paper
• Biochemical characterization and crystal structure determination of human heart short chain L-3-hydroxyacyl-CoA dehydrogenase provide insights into catalytic mechanism.

  1999cited by this paper
• The catalytic reaction and inhibition mechanism of Drosophila alcohol dehydrogenase: observation of an enzyme-bound NAD-ketone adduct at 1.4 A resolution by X-ray crystallography.

  1999cited by this paper
• Non-proline cis peptide bonds in proteins.

  1999cited by this paper
• Molecular Analysis of the Gene Encoding F420-Dependent Glucose-6-Phosphate Dehydrogenase fromMycobacterium smegmatis

  1998cited by this paper
• Crystallography & NMR system: A new software suite for macromolecular structure determination.

  1998cited by this paper
• Biochemistry of methanogenesis: a tribute to Marjory Stephenson. 1998 Marjory Stephenson Prize Lecture.

  1998cited by this paper
• [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

  1997cited by this paper
• Function of coenzyme F420-dependent NADP reductase in methanogenic archaea containing an NADP-dependent alcohol dehydrogenase

  1997cited by this paper
• The crystal structure of the flavin containing enzyme dihydroorotate dehydrogenase A from Lactococcus lactis.

  1997cited by this paper
• An extensively modified version of MolScript that includes greatly enhanced coloring capabilities.

  1997cited by this paper
• Processing of X-ray diffraction data collected in oscillation mode.

  1997cited by this paper
• STRATEGY: a program to optimize the starting spindle angle and scan range for X-ray data collection

  1997cited by this paper
• [20] Processing of X-ray diffraction data collected in oscillation mode.

  1997cited by this paper
• xdlMAPMAN and xdlDATAMAN - programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets.

  1996cited by this paper
• Methods used in the structure determination of bovine mitochondrial F1 ATPase.

  1996cited by this paper
• The 1.5-Å Resolution Crystal Structure of Bacterial Luciferase in Low Salt Conditions*

  1996cited by this paper
• Si-face stereospecificity at C5 of coenzyme F420 for F420-dependent glucose-6-phosphate dehydrogenase from Mycobacterium smegmatis and F420-dependent alcohol dehydrogenase from Methanoculleus thermophilicus.

  1996cited by this paper
• Short-chain dehydrogenases/reductases (SDR).

  1995cited by this paper
• Characterization of a 45-kDa flavoprotein and evidence for a rubredoxin, two proteins that could participate in electron transport from H2 to CO2 in methanogenesis in Methanobacterium thermoautotrophicum.

  1995cited by this paper
• Molecular characterization of the lincomycin‐production gene cluster of Streptomyces lincolnensis 78‐11

  1995cited by this paper
• Coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin reductase (Mer) from Methanobacterium thermoautotrophicum strain Marburg. Cloning, sequencing, transcriptional analysis, and functional expression in Escherichia coli of the mer gene.

  1995cited by this paper
• Old yellow enzyme at 2 A resolution: overall structure, ligand binding, and comparison with related flavoproteins.

  1994cited by this paper
• Common structural features of the luxF protein and the subunits of bacterial luciferase: Evidence for a (βα)8 fold in luciferase

  1994cited by this paper
• PROCHECK: a program to check the stereochemical quality of protein structures

  1993cited by this paper
• Biochemistry of methanogenesis.

  1992cited by this paper
• Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors.

  1991cited by this paper
• Purification and properties of F420- and NADP(+)-dependent alcohol dehydrogenases of Methanogenium liminatans and Methanobacterium palustre, specific for secondary alcohols.

  1991cited by this paper
• Accurate Bond and Angle Parameters for X-ray Protein Structure Refinement

  1991cited by this paper
• Sparse matrix sampling: a screening method for crystallization of proteins

  1991cited by this paper
• Improved methods for building protein models in electron density maps and the location of errors in these models.

  1991cited by this paper
• A program to produce both detailed and schematic plots of protein structures

  1991cited by this paper
• Expression of secondary alcohol dehydrogenase in methanogenic bacteria and purification of the F420-specific enzyme from Methanogenium thermophilum strain TCI

  1989cited by this paper
• Refined structure of spinach glycolate oxidase at 2 A resolution.

  1989cited by this paper
• Further consideration of flavin coenzyme biochemistry afforded by geometry-optimized molecular orbital calculations.

  1987cited by this paper
• Further consideration of flavin coenzyme biochemistry afforded by geometry-optimized molecular orbital calculations.

  1987cited by this paper
• Three-dimensional structure of the iron-sulfur flavoprotein trimethylamine dehydrogenase at 2.4-A resolution.

  1986cited by this paper
• Pyrazole binding in crystalline binary and ternary complexes with liver alcohol dehydrogenase.

  1982cited by this paper
• Covalent structure of subunits of bacterial luciferase: NH2-terminal sequence demonstrates subunit homology.

  1979cited by this paper
• Structure of chicken muscle triose phosphate isomerase determined crystallographically at 2.5Å resolution: using amino acid sequence data

  1975cited by this paper
• Solvent content of protein crystals.

  1968cited by this paper

• Structural and Mechanistic Insights into a Novel Monooxygenase for Poly(acrylic acid) Biodegradation

  2024influential citation
• Mutational and structural studies of (βα)8‐barrel fold methylene‐tetrahydropterin reductases utilizing a common catalytic mechanism

  2024cites this paper
• F420-dependent transformations in biosynthesis of secondary metabolites.

  2024cites this paper
• Description and genome analysis of a novel archaeon isolated from a syntrophic pyrite-forming enrichment culture and reclassification of Methanospirillum hungatei strains GP1 and SK as Methanospirillum purgamenti sp. nov.

  2024cites this paper
• Model Organisms To Study Methanogenesis, a Uniquely Archaeal Metabolism

  2023cites this paper
• Convergent evolution of (βα)8-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism

  2023cites this paper
• Deazaflavin cofactor boosts earthworms Henlea bioluminescence.

  2023cites this paper
• Uncovering Zn2+ as a cofactor of FAD-dependent Pseudomonas aeruginosa PAO1 d-2-hydroxyglutarate dehydrogenase

  2023cites this paper
• Identification and characterization of archaeal and bacterial F420 -dependent thioredoxin reductases.

  2023cites this paper
• Understanding the complete bioluminescence cycle from a multiscale computational perspective: A review

  2022cites this paper
• Identification of long-chain alkane-degrading (LadA) monooxygenases in Aspergillus flavus via in silico analysis

  2022influential citation
• Natural Flavins: Occurrence, Role, and Noncanonical Chemistry

  2021cites this paper
• Open Issues for Protein Function Assignment in Haloferax volcanii and Other Halophilic Archaea

  2021cites this paper
• On the diversity of F420 ‐dependent oxidoreductases: A sequence‐ and structure‐based classification

  2021cites this paper
• Complete Genome Sequence of the Secondary Alcohol-Utilizing Methanogen Methanospirillum hungatei Strain GP1

  2021influential citation
• Cofactor F420: an expanded view of its distribution, biosynthesis and roles in bacteria and archaea

  2021cites this paper
• Bioinorganic insights of the PQQ-dependent alcohol dehydrogenases

  2021cites this paper
• Protein Model and Function Analysis in Quorum-Sensing Pathway of Vibrio qinghaiensis sp.-Q67

  2021cites this paper
• Biosynthesis of the redox cofactor mycofactocin is controlled by the transcriptional regulator MftR and induced by long-chain acyl-CoA species

  2021cites this paper
• A Tailor-Made Deazaflavin-Mediated Recycling System for Artificial Nicotinamide Cofactor Biomimetics

  2021cites this paper
• Outstanding reinforcement on chain elongation through five-micrometer-sized biochar

  2020cites this paper
• Structural Basis of Hydrogenotrophic Methanogenesis.

  2020cites this paper
• Facile Stereoselective Reduction of Prochiral Ketones by using an F420‐dependent Alcohol Dehydrogenase

  2020cites this paper
• On the diversity of F420-dependent oxidoreductases: a sequence- and structure-based classification

  2020cites this paper
• Cofactor F420-Dependent Enzymes: An Under-Explored Resource for Asymmetric Redox Biocatalysis

  2019cites this paper
• Hydrogenotrophic Methanogenesis

  2019cites this paper
• Chemoenzymatic Synthesis of an Unnatural Deazaflavin Cofactor That Can Fuel F420-Dependent Enzymes

  2019cites this paper
• Reconstructing the evolutionary history of F420-dependent dehydrogenases

  2018cites this paper
• Exploring deazaflavoenzymes as biocatalysts

  2018influential citation
• Mechanisms and Origin of Bacterial Biolumenescence

  2018cites this paper
• Comments to Article by Willetts A. et al., Microorganisms 2016, 4, 38

  2017cites this paper
• Towards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semi-synthetic hydrogenase.

  2017cites this paper
• Identification of the hcb Gene Operon Involved in Catalyzing Aerobic Hexachlorobenzene Dechlorination in Nocardioides sp. Strain PD653

  2017influential citation
• Flavoenzymes at the crossroads of biocatalysis and structural biology

  2017cites this paper
• Reply to the Comment by Littlechild and Isupov

  2017cites this paper
• Investigating the Reaction Mechanism of F420-Dependent Glucose-6-phosphate Dehydrogenase from Mycobacterium tuberculosis: Kinetic Analysis of the Wild-Type and Mutant Enzymes.

  2016cites this paper
• F420H2 Is Required for Phthiocerol Dimycocerosate Synthesis in Mycobacteria

  2016influential citation
• Flavin-Dependent Redox Transfers by the Two-Component Diketocamphane Monooxygenases of Camphor-Grown Pseudomonas putida NCIMB 10007

  2016cites this paper
• Discovery and characterization of an F420-dependent glucose-6-phosphate dehydrogenase (Rh-FGD1) from Rhodococcus jostii RHA1

  2016cites this paper
• Physiology, Biochemistry, and Applications of F420- and Fo-Dependent Redox Reactions

  2016cites this paper
• Production of the Streptomyces scabies coronafacoyl phytotoxins involves a novel biosynthetic pathway with an F420‐dependent oxidoreductase and a short‐chain dehydrogenase/reductase

  2016cites this paper
• The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria

  2016cites this paper
• Discovery and characterization of an F 420-dependent glucose-6-phosphate dehydrogenase ( Rh-FGD 1 ) from Rhodococcus jostii

  2016cites this paper
• Discovery and characterization of an F 420-dependent glucose-6-phosphate dehydrogenase ( Rh-FGD 1 ) from Rhodococcus jostii RHA 1

  2016cites this paper
• INCREASED HYDRIDE TRANSFER RATES WITHIN T09A MUTANT OF F420:H2 NADP+ OXIDOREDUCTASE

  2016cites this paper
• The oxygenating constituent of 3,6-diketocamphane monooxygenase from the CAM plasmid of Pseudomonas putida: the first crystal structure of a type II Baeyer–Villiger monooxygenase

  2015influential citation
• Mechanistic and kinetic studies on F420H2: NADP+ oxidoreductase from Archeoglobus fulgidus

  2015influential citation
• Molecular insights into the binding of coenzyme F420 to the conserved protein Rv1155 from Mycobacterium tuberculosis

  2015cites this paper
• Biochemical fossils of the ancient transition from geoenergetics to bioenergetics in prokaryotic one carbon compound metabolism.

  2014cites this paper
• Characterization of the frhAGB-encoding hydrogenase from a non-methanogenic hyperthermophilic archaeon

  2014cites this paper
• Insights into the Bioactivity of Mensacarcin and Epoxide Formation by MsnO8

  2014cites this paper
• Characterizing the role of CFL, OSR and SDR in the biosynthesis of the streptomyces scabies COR-like metabolites

  2014influential citation
• Recombinant Expression, Purification And Kinetic Characterization Of F₄₂₀-cofactor Dependent Glucose-6-phosphate Dehydrogenase From Mycobacterium Tuberculosis

  2013cites this paper
• Rv0132c of Mycobacterium tuberculosis Encodes a Coenzyme F420-Dependent Hydroxymycolic Acid Dehydrogenase

  2013cites this paper
• Elucidating the structural and conformational factors responsible for the activity and substrate specificity of alkanesulfonate monooxygenase

  2012cites this paper
• Structure of Ddn, the Deazaflavin-Dependent Nitroreductase from Mycobacterium tuberculosis Involved in Bioreductive Activation of PA-824

  2012cites this paper
• Metabolic Engineering of Cofactor F420 Production in Mycobacterium smegmatis

  2010cites this paper
• Unexpected Abundance of Coenzyme F420-Dependent Enzymes in Mycobacterium tuberculosis and Other Actinobacteria

  2010influential citation
• Structural basis of the hydride transfer mechanism in F(420)-dependent methylenetetrahydromethanopterin dehydrogenase.

  2009cites this paper
• Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

  2009cites this paper
• Functional roles of conserved active site amino acids in the desulfonation reaction catalyzed by the alkanesulfonate monooxygenase from Escherichia coli

  2008cites this paper
• Biochemical origins of lactaldehyde and hydroxyacetone in Methanocaldococcus jannaschii.

  2008cites this paper
• Crystal Structures of F420-dependent Glucose-6-phosphate Dehydrogenase FGD1 Involved in the Activation of the Anti-tuberculosis Drug Candidate PA-824 Reveal the Basis of Coenzyme and Substrate Binding*

  2008cites this paper
• Molecular Insights into the Biosynthesis of the F420 Coenzyme*

  2008cites this paper
• Crystal structure of long-chain alkane monooxygenase (LadA) in complex with coenzyme FMN: unveiling the long-chain alkane hydroxylase.

  2008cites this paper
• General Characteristics and Important Model Organisms

  2007cites this paper
• A New Type of Sulfite Reductase, a Novel Coenzyme F420-dependent Enzyme, from the Methanarchaeon Methanocaldococcus jannaschii*

  2005cites this paper
• Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F420: Architecture of the F420/FMN binding site of enzymes within the nonprolyl cis‐peptide containing bacterial luciferase family

  2005cites this paper
• Si‐face stereospecificity at C5 of coenzyme F420 for F420H2 oxidase from methanogenic Archaea as determined by mass spectrometry

  2005cites this paper
• F420H2 oxidase (FprA) from Methanobrevibacter arboriphilus, a coenzyme F420-dependent enzyme involved in O2 detoxification

  2004cites this paper
• Identification and characterization of archaeal and bacterial F 420 -dependent thioredoxin reductases

  year unknowncites this paper