Root Type-Specific Reprogramming of Maize Pericycle Transcriptomes by Local High Nitrate Results in Disparate Lateral Root Branching Patterns1[OPEN]

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Plant Physiology

• Publication date

  2016-01-25

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1104/pp.15.01885PMID 26811190PMCID PMC4775145
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Cell Type-Speci fi c Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation 1 [ OPEN ]

  2015influential reference
• Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi

  2015cited by this paper
• Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit

  2015cited by this paper
• Reduced Lateral Root Branching Density Improves Drought Tolerance in Maize1[OPEN]

  2015cited by this paper
• Cell cycle entry, maintenance, and exit during plant development.

  2015cited by this paper
• Regulation of plant root system architecture: implications for crop advancement.

  2015cited by this paper
• Root-type-specific plasticity in response to localized high nitrate supply in maize (Zea mays).

  2015influential reference
• Cell Type-Specific Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation1[OPEN]

  2015influential reference
• Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway

  2014cited by this paper
• The Optimal Lateral Root Branching Density for Maize Depends on Nitrogen and Phosphorus Availability1[C][W][OPEN]

  2014cited by this paper
• STRING v10: protein–protein interaction networks, integrated over the tree of life

  2014cited by this paper
• Phenotypic plasticity of the maize root system in response to heterogeneous nitrogen availability

  2014cited by this paper
• CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner

  2014cited by this paper
• Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling

  2014cited by this paper
• A novel morphological response of maize (Zea mays) adult roots to heterogeneous nitrate supply revealed by a split-root experiment.

  2014influential reference
• Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments

  2014cited by this paper
• Trimmomatic: a flexible trimmer for Illumina sequence data

  2014cited by this paper
• Branching Out in Roots: Uncovering Form, Function, and Regulation1

  2014cited by this paper
• voom: precision weights unlock linear model analysis tools for RNA-seq read counts

  2014cited by this paper
• Bayesian analysis of RNA sequencing data by estimating multiple shrinkage priors.

  2013cited by this paper
• Comparative transcriptomics as a tool for the identification of root branching genes in maize.

  2013cited by this paper
• Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots

  2013cited by this paper
• Phloem-associated auxin response maxima determine radial positioning of lateral roots in maize

  2012cited by this paper
• Bayesian analysis of RNA sequencing data by estimating multiple shrinkage priors

  2012cited by this paper
• Nitrogen economics of root foraging: Transitive closure of the nitrate–cytokinin relay and distinct systemic signaling for N supply vs. demand

  2011influential reference
• Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize

  2011cited by this paper
• Oscillating Gene Expression Determines Competence for Periodic Arabidopsis Root Branching

  2010cited by this paper
• A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity.

  2010cited by this paper
• Shoot growth potential drives N uptake in maize plants and correlates with root growth in the soil

  2010cited by this paper
• agriGO: a GO analysis toolkit for the agricultural community

  2010cited by this paper
• An R2R3-type transcription factor gene AtMYB59 regulates root growth and cell cycle progression in Arabidopsis

  2009cited by this paper
• The Maize Root System: Morphology, Anatomy, and Genetics

  2009cited by this paper
• Transcriptional control of the cell cycle.

  2009cited by this paper
• Root uptake regulation: a central process for NPS homeostasis in plants.

  2009cited by this paper
• Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations

  2009cited by this paper
• Auxin acts as a local morphogenetic trigger to specify lateral root founder cells

  2008cited by this paper
• Conserved and diverse mechanisms in root development.

  2008cited by this paper
• Corresponding authors.

  2008cited by this paper
• Root System Architecture from Coupling Cell Shape to Auxin Transport

  2008cited by this paper
• Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

  2008cited by this paper
• Molecular Evolution of the CPP-like Gene Family in Plants: Insights from Comparative Genomics of Arabidopsis and Rice

  2008cited by this paper
• Diarch Symmetry of the Vascular Bundle in Arabidopsis Root Encompasses the Pericycle and Is Reflected in Distich Lateral Root Initiation1[W]

  2007cited by this paper
• Transcriptomic and Proteomic Analyses of Pericycle Cells of the Maize Primary Root1[W][OA]

  2007cited by this paper
• Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis

  2007cited by this paper
• The Arabidopsis Transcription Factor MYB77 Modulates Auxin Signal Transduction[W]

  2007cited by this paper
• Cell Cycle Progression in the Pericycle Is Not Sufficient for SOLITARY ROOT/IAA14-Mediated Lateral Root Initiation in Arabidopsis thalianaw⃞

  2005cited by this paper
• Isolation, Characterization, and Pericycle-Specific Transcriptome Analyses of the Novel Maize Lateral and Seminal Root Initiation Mutant rum11[w]

  2005cited by this paper
• Intrinsic and environmental response pathways that regulate root system architecture.

  2005cited by this paper
• limma: Linear Models for Microarray Data

  2005influential reference
• Genetic dissection of root formation in maize (Zea mays) reveals root-type specific developmental programmes.

  2004cited by this paper
• From weeds to crops: genetic analysis of root development in cereals.

  2004cited by this paper
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

  2004cited by this paper
• MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

  2004cited by this paper
• Transcript profiling of early lateral root initiation.

  2004cited by this paper
• Local and long-range signaling pathways regulating plant responses to nitrate.

  2002cited by this paper
• Chromosome-microtubule interactions during mitosis.

  2002cited by this paper
• Auxin-Mediated Cell Cycle Activation during Early Lateral Root Initiation Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004960.

  2002cited by this paper
• Nitrate and phosphate availability and distribution have different effects on root system architecture of Arabidopsis.

  2002cited by this paper
• Cell division: Plant cell division: building walls in the right places

  2001cited by this paper
• Expression Data

  2001cited by this paper
• THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY

  2001influential reference
• The peri-cell-cycle in Arabidopsis.

  2001cited by this paper
• G2/M-Phase–Specific Transcription during the Plant Cell Cycle Is Mediated by c-Myb–Like Transcription Factors

  2001cited by this paper
• The Maize Homologue of the Cell Cycle Checkpoint Protein MAD2 Reveals Kinetochore Substructure and Contrasting Mitotic and Meiotic Localization Patterns

  1999cited by this paper
• Root xylem embolisms: implications for water flow to the shoot in single-rooted maize plants

  1999cited by this paper
• Early post-embryonic root formation is specifically affected in the maize mutant lrt1.

  1998cited by this paper
• An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture.

  1998cited by this paper
• Mitotic Arrest: Mad2 Prevents Sleepy from Waking Up the APC

  1998cited by this paper
• Molecular motors in higher plants

  1997cited by this paper
• Organization and cell differentiation in lateral roots of Arabidopsis thaliana.

  1997cited by this paper
• Isolation and characterization of rtcs, a maize mutant deficient in the formation of nodal roots

  1996cited by this paper
• Transcriptional control of the cell cycle.

  1996cited by this paper
• Controlling the false discovery rate: a practical and powerful approach to multiple testing

  1995influential reference
• The regulation of histone synthesis in the cell cycle.

  1991cited by this paper
• Mineral Nutrition of Higher Plants

  1988cited by this paper

• A multi-class deep learning segmentation approach for automated analysis of axial and lateral roots in barley plants

  2026cites this paper
• Natural variation in a cortex/epidermis-specific transcription factor bZIP89 determines lateral root development and drought resilience in maize

  2025cites this paper
• Exploring Hormonal Pathways and Gene Networks in Crown Root Formation Under Stress Conditions: An Update

  2025cites this paper
• Nitrogen deficiency identifies carbon metabolism pathways and root adaptation in maize

  2025cites this paper
• Plant-microbial interplay for organic nitrogen mediated by functional specificity of root compartments

  2025cites this paper
• Ethylene signal-driven plant-multitrophic synergy boosts crop performance

  2025influential citation
• Drought tolerance of wheat genotypes is associated with rhizosphere size and enzyme system

  2024cites this paper
• Enhanced CO2 Coordinates the Spatial Recruitment of Diazotrophs in Rice Via Root Development.

  2024cites this paper
• Transport and spatio-temporal conversion of sugar facilitate the formation of spatial gradients of starch in wheat caryopses

  2024cites this paper
• Lateral root enriched Massilia associated with plant flowering in maize

  2024influential citation
• A novel semi-dominant allele of the transmembrane NAC transcription factor ZmNTL2 reduces the size of multiple maize organs

  2024cites this paper
• Genome-Wide Meta-Analysis of QTLs Associated with Root Traits and Implications for Maize Breeding

  2023cites this paper
• Natural variation in ZmNAC087 contributes to total root length regulation in maize seedlings under salt stress

  2023cites this paper
• Lateral root elongation in maize is related to auxin synthesis and transportation mediated by N metabolism under a mixed NO3- and NH4+ supply

  2023cites this paper
• Row spacing and phosphorus use efficiency in no-tillage maize

  2023cites this paper
• Single-cell RNA sequencing reveals the landscape of maize root tips and assists in identification of cell type-specific nitrate-response genes

  2022cites this paper
• Root physiological adaptations that enhance the grain yield and nutrient use efficiency of maize (Zea mays L) and their dependency on phosphorus placement depth

  2022cites this paper
• Maize Genotypes With Different Zinc Efficiency in Response to Low Zinc Stress and Heterogeneous Zinc Supply

  2021cites this paper
• Interplay Between Root Structure and Function in Enhancing Efficiency of Nitrogen and Phosphorus Acquisition

  2021cites this paper
• Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation

  2021cites this paper
• Endogenous nutrients are concentrated in specific tissues in the Zea mays seedling

  2021cites this paper
• Strigolactones And Auxin Cooperate To Regulate Maize Root Development and Response to Nitrate.

  2021cites this paper
• Spatiotemporal Dynamics of Maize (Zea mays L.) Root Growth and Its Potential Consequences for the Assembly of the Rhizosphere Microbiota

  2021cites this paper
• Maize genotype-specific exudation strategies: An adaptive mechanism to increase microbial activity in the rhizosphere

  2021cites this paper
• Sustainable Cropping Requires Adaptation to a Heterogeneous Rhizosphere.

  2020cites this paper
• Signaling pathways underlying nitrogen-dependent changes in root system architecture: from model to crop species

  2020cites this paper
• Involvement of a truncated MADS-box transcription factor ZmTMM1 in root nitrate foraging

  2020cites this paper
• Nitrate in 2020: Thirty Years from Transport to Signaling Networks

  2020cites this paper
• Seminal and Nodal Roots of Barley Differ in Anatomy, Proteome and Nitrate Uptake Capacity.

  2020cites this paper
• RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum

  2020cites this paper
• Understanding of Adventitious Root Formation: What Can We Learn From Comparative Genetics?

  2020cites this paper
• A quick protocol for the identification and characterization of early growth mutants in tomato.

  2020cites this paper
• Transcriptome-based approaches for clarification of nutritional responses and improvement of crop production

  2020cites this paper
• OP-PCPJ200060 1297..1308

  2020cites this paper
• Gene regulatory network for lateral root formation in Arabidopsis thaliana

  2019cites this paper
• Cell Type-Specific Transcriptomics of Lateral Root Formation and Plasticity

  2019cites this paper
• Plasticity of Lateral Root Branching in Maize

  2019cites this paper
• Genotypic variation and nitrogen stress effects on root anatomy in maize are node specific

  2019cites this paper
• Abscisic Acid Regulates Auxin Distribution to Mediate Maize Lateral Root Development Under Salt Stress

  2019cites this paper
• ZmRAP2.7, an AP2 Transcription Factor, Is Involved in Maize Brace Roots Development

  2019cites this paper
• Nitrate affects transcriptional regulation of UPBEAT1 and ROS localisation in roots of Zea mays L.

  2018cites this paper
• Transcriptomic Dissection of Maize Root System Development

  2018cites this paper
• Lateral Root Formation: Building a Meristem de novo

  2018cites this paper
• Seeds with low phosphorus content: not so bad after all?

  2018cites this paper
• Laser Capture Microdissection-Based RNA-Seq of Barley Grain Tissues.

  2018cites this paper
• Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

  2018cites this paper
• Laser Capture Micro-Dissection Coupled to RNA Sequencing: A Powerful Approach Applied to the Model Legume Medicago truncatula in Interaction with Sinorhizobium meliloti.

  2018cites this paper
• Plant Transcription Factors

  2018cites this paper
• Maize lateral root developmental plasticity induced by mild water stress. I: Genotypic variation across a high-resolution series of water potentials.

  2018cites this paper
• Genetic Control of Root System Development in Maize.

  2018cites this paper
• Nitrate: A Crucial Signal during Lateral Roots Development

  2017cites this paper
• Complexity and specificity of the maize (Zea mays L.) root hair transcriptome

  2017cites this paper
• Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots

  2017cites this paper
• Root Hydraulic and Aquaporin Responses to N Availability

  2017cites this paper
• Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis

  2017cites this paper
• A DII Domain-Based Auxin Reporter Uncovers Low Auxin Signaling during Telophase and Early G11[OPEN]

  2016influential citation
• Genetic Control of Lateral Root Formation in Cereals.

  2016cites this paper