Genome-Wide Identification and Characterization of bZIP Transcription Factors in Brassica oleracea under Cold Stress

Cabbages (Brassica oleracea L.) are an important vegetable crop around world, and cold temperature is among the most significant abiotic stresses causing agricultural losses, especially in cabbage crops. Plant bZIP transcription factors play diverse roles in biotic/abiotic stress responses. In this study, 119 putative BolbZIP transcription factors were identified using amino acid sequences from several bZIP domain consensus sequences. The BolbZIP members were classified into 63 categories based on amino acid sequence similarity and were also compared with BrbZIP and AtbZIP transcription factors. Based on this BolbZIP identification and classification, cold stress-responsive BolbZIP genes were screened in inbred lines, BN106 and BN107, using RNA sequencing data and qRT-PCR. The expression level of the 3 genes, Bol008071, Bol033132, and Bol042729, was significantly increased in BN107 under cold conditions and was unchanged in BN106. The upregulation of these genes in BN107, a cold-susceptible inbred line, suggests that they might be significant components in the cold response. Among three identified genes, Bol033132 has 97% sequence similarity to Bra020735, which was identified in a screen for cold-related genes in B. rapa and a protein containing N-rich regions in LCRs. The results obtained in this study provide valuable information for understanding the potential function of BolbZIP transcription factors in cold stress responses.

• Publication year

  2016

• Venue

  BioMed Research International

• Publication date

  2016-05-23

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1155/2016/4376598PMID 27314020PMCID 4893578
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Genomic Prediction and Association Mapping of Curd-Related Traits in Gene Bank Accessions of Cauliflower

  2017cited by this paper
• Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

  2017cited by this paper
• Basic Leucine Zipper Family in Barley: Genome-Wide Characterization of Members and Expression Analysis

  2014cited by this paper
• The Arabidopsis transcription factor bZIP11 activates auxin-mediated transcription by recruiting the histone acetylation machinery

  2014cited by this paper
• Transcriptome analysis of newly classified bZIP transcription factors of Brassica rapa in cold stress response.

  2014cited by this paper
• Regulatory Network of Secondary Metabolism in Brassica rapa: Insight into the Glucosinolate Pathway

  2014cited by this paper
• Four Arabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress

  2014cited by this paper
• The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

  2014cited by this paper
• Genome-Wide Analysis of the bZIP Transcription Factors in Cucumber

  2014cited by this paper
• The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis

  2013cited by this paper
• Low complexity regions (LCRs) contribute to the hypervariability of the HIV-1 gp120 protein.

  2013cited by this paper
• TGA transcription factors and jasmonate-independent COI1 signalling regulate specific plant responses to reactive oxylipins

  2013cited by this paper
• Molecular characterization of an ABA insensitive 5 orthologue in Brassica oleracea.

  2013influential reference
• Metabolic profiling of glucosinolates, anthocyanins, carotenoids, and other secondary metabolites in kohlrabi (Brassica oleracea var. gongylodes).

  2012cited by this paper
• ABF transcription factors of Thellungiella salsuginea

  2012cited by this paper
• The genome of the mesopolyploid crop species Brassica rapa

  2011cited by this paper
• Gibberellins negatively regulate low temperature-induced anthocyanin accumulation in a HY5/HYH-dependent manner

  2011cited by this paper
• The Arabidopsis bZIP Gene AtbZIP63 Is a Sensitive Integrator of Transient Abscisic Acid and Glucose Signals1[W][OA]

  2011cited by this paper
• Heterodimers of the Arabidopsis Transcription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress[W]

  2011cited by this paper
• Genome-wide expansion and expression divergence of the basic leucine zipper transcription factors in higher plants with an emphasis on sorghum.

  2011cited by this paper
• Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency

  2010cited by this paper
• Interaction with Polyglutamine Aggregates Reveals a Q/N-rich Domain in TDP-43*

  2010cited by this paper
• Dual roles of the bZIP transcription factor PERIANTHIA in the control of floral architecture and homeotic gene expression

  2009cited by this paper
• Arabidopsis thaliana class-II TGA transcription factors are essential activators of jasmonic acid/ethylene-induced defense responses.

  2009cited by this paper
• Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis

  2008cited by this paper
• Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice1[W][OA]

  2007cited by this paper
• bZIP transcription factors in Arabidopsis

  2002cited by this paper
• bZIP transcription factors in Arabidopsis.

  2002cited by this paper
• MYB transcription factors in Arabidopsis.

  2002cited by this paper

• Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during stem in tumorous stem mustard

  2026cites this paper
• Transcriptome reveals molecular mechanism of cabbage response to low temperature stress and functional study of BoPYL8 gene

  2024cites this paper
• A bZIP type transcription factor from Picrorhiza kurrooa modulates the expression of terpenoid biosynthesis genes in Nicotiana benthamiana

  2024cites this paper
• In-Depth Characterization of bZIP Genes in the Context of Endoplasmic Reticulum (ER) Stress in Brassica campestris ssp. chinensis

  2024cites this paper
• The Impact of Salinity on Crop Yields and the Confrontational Behavior of Transcriptional Regulators, Nanoparticles, and Antioxidant Defensive Mechanisms under Stressful Conditions: A Review

  2024cites this paper
• “Genome-wide identification of bZIP gene family in Pearl millet and transcriptional profiling under abiotic stress, phytohormonal treatments; and functional characterization of PgbZIP9”

  2024cites this paper
• Cold stress in Brassica vegetables: Morpho-physiological and molecular responses underlying adaptive mechanism

  2024cites this paper
• QTL-seq and transcriptomic integrative analyses reveal two positively regulated genes that control the low-temperature germination ability of MTP–maize introgression lines

  2023cites this paper
• Cloning and functional analysis of the BrCUC2 gene in Brassica rapa L

  2023cites this paper
• Comparative phylogenomic insights of KCS and ELO gene families in Brassica species indicate their role in seed development and stress responsiveness

  2023cites this paper
• Genome-wide identification and expression characterization of the DoG gene family of moso bamboo (Phyllostachys edulis)

  2022cites this paper
• Genome-Wide Identification and Expression Analysis of the Basic Leucine Zipper (bZIP) Transcription Factor Gene Family in Fusarium graminearum

  2022cites this paper
• Comparative analysis of R2R3-MYB transcription factors in the flower of Iris laevigata identifies a novel gene regulating tobacco cold tolerance.

  2022cites this paper
• Genome-wide transcriptome profiling revealed biological macromolecules respond to low temperature stress in Brassica napus L

  2022cites this paper
• Zinc deficiency responses: bridging the gap between Arabidopsis and dicot crops.

  2021cites this paper
• Effects of Short-Term Root Cooling before Harvest on Yield and Food Quality of Chinese Broccoli (Brassica oleracea var. Alboglabra Bailey)

  2021cites this paper
• Identification of differentially expressed genes involved in amino acid and lipid accumulation of winter turnip rape (Brassica rapa L.) in response to cold stress.

  2021cites this paper
• EXPRESSION AND BIOINFORMATIC ANALYSIS OF ANTPS1 GENE IN NAKED OATS (AVENA NUDA L.)

  2019cites this paper
• The bZIP gene family in watermelon: genome-wide identification and expression analysis under cold stress and root-knot nematode infection

  2019cites this paper
• Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance

  2018cites this paper
• Transgenic Plants for Improved Salinity and Drought Tolerance

  2018cites this paper
• Enhancing Rapeseed Tolerance to Heat and Drought Stresses in a Changing Climate: Perspectives for Stress Adaptation from Root System Architecture

  2018influential citation
• Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species.

  2018cites this paper
• Exploring transcription factors reveals crucial members and regulatory networks involved in different abiotic stresses in Brassica napus L.

  2018cites this paper
• Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

  2017cites this paper
• Genomic Prediction and Association Mapping of Curd-Related Traits in Gene Bank Accessions of Cauliflower

  2017cites this paper