High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum.

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Microbiology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Chemistry, Environmental Science

• Identifiers
  DOI 10.1099/mic.0.062059-0PMID 23103979
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Global Analysis of the Regulon of the Transcriptional Repressor LexA, a Key Component of SOS Response in Mycobacterium tuberculosis

  2012cited by this paper
• Identification and Characterization of γ-Aminobutyric Acid Uptake System GabP Cg (NCgl0464) in Corynebacterium glutamicum

  2012cited by this paper
• EbfC (YbaB) Is a New Type of Bacterial Nucleoid-Associated Protein and a Global Regulator of Gene Expression in the Lyme Disease Spirochete

  2012cited by this paper
• Virulence Regulator EspR of Mycobacterium tuberculosis Is a Nucleoid-Associated Protein

  2012cited by this paper
• Characterization of the Fur Regulon in Pseudomonas syringae pv. tomato DC3000

  2011cited by this paper
• An Extracytoplasmic Function Sigma Factor-Mediated Cell Surface Signaling System in Pseudomonas syringae pv. tomato DC3000 Regulates Gene Expression in Response to Heterologous Siderophores

  2011cited by this paper
• CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands

  2011influential reference
• A ChIP-Seq Benchmark Shows That Sequence Conservation Mainly Improves Detection of Strong Transcription Factor Binding Sites

  2011cited by this paper
• Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

  2011cited by this paper
• The pstSCAB operon for phosphate uptake is regulated by the global regulator GlxR in Corynebacterium glutamicum.

  2011cited by this paper
• Regulation of the nitrate reductase operon narKGHJI by the cAMP-dependent regulator GlxR in Corynebacterium glutamicum.

  2011cited by this paper
• Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation

  2011cited by this paper
• Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering

  2011cited by this paper
• Genome-Wide Identification of In Vivo Binding Sites of GlxR, a Cyclic AMP Receptor Protein-Type Regulator in Corynebacterium glutamicum

  2011cited by this paper
• cAMP, c‐di‐GMP, c‐di‐AMP and now cGMP: bacteria use them all!

  2011cited by this paper
• Genome-wide transcription factor binding: beyond direct target regulation.

  2011cited by this paper
• Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene regulatory network.

  2010cited by this paper
• Functional characterization of the glxR deletion mutant of Corynebacterium glutamicum ATCC 13032: involvement of GlxR in acetate metabolism and carbon catabolite repression.

  2010cited by this paper
• Characterization of an adenylate cyclase gene (cyaB) deletion mutant of Corynebacterium glutamicum ATCC 13032

  2010cited by this paper
• Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

  2010cited by this paper
• A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs

  2010cited by this paper
• Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

  2010cited by this paper
• The GlxR regulon of the amino acid producer Corynebacterium glutamicum: Detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model.

  2009cited by this paper
• A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

  2009cited by this paper
• Transcriptional control of the succinate dehydrogenase operon sdhCAB of Corynebacterium glutamicum by the cAMP-dependent regulator GlxR and the LuxR-type regulator RamA.

  2009cited by this paper
• Genome‐wide regulon and crystal structure of BlaI (Rv1846c) from Mycobacterium tuberculosis

  2009cited by this paper
• ChIP–seq: advantages and challenges of a maturing technology

  2009cited by this paper
• Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet

  2009cited by this paper
• Methods for studying global patterns of DNA binding by bacterial transcription factors and RNA polymerase.

  2008cited by this paper
• The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator.

  2008influential reference
• Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR.

  2008influential reference
• Small non-coding RNAs in Streptomyces coelicolor

  2008cited by this paper
• The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior

  2008cited by this paper
• Comparative genomic reconstruction of transcriptional regulatory networks in bacteria.

  2007cited by this paper
• Transcriptionally regulated adhA gene encodes alcohol dehydrogenase required for ethanol and n-propanol utilization in Corynebacterium glutamicum R

  2007cited by this paper
• Expression of Corynebacterium glutamicum glycolytic genes varies with carbon source and growth phase.

  2007cited by this paper
• Genomic analysis of protein–DNA interactions in bacteria: insights into transcription and chromosome organization

  2007cited by this paper
• The Alcohol Dehydrogenase Gene adhA in Corynebacterium glutamicum Is Subject to Carbon Catabolite Repression

  2007cited by this paper
• Ethanol Catabolism in Corynebacterium glutamicum

  2007cited by this paper
• Fast index based algorithms and software for matching position specific scoring matrices

  2006cited by this paper
• Characterization and Use of Catabolite-Repressed Promoters from Gluconate Genes in Corynebacterium glutamicum

  2006cited by this paper
• Evolutionary systems biology : methods to reconstruct and compare transcriptional regulatory networks

  2006cited by this paper
• Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

  2005influential reference
• Structure and evolution of transcriptional regulatory networks.

  2004cited by this paper
• DNA Microarrays: Experimental Issues, Data Analysis, and Application to Bacterial Systems

  2004cited by this paper
• The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.

  2003cited by this paper
• Characterizing the physical genome

  2002cited by this paper
• Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle

  2002cited by this paper
• Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum

  1995cited by this paper
• Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer

  1994cited by this paper
• Isoleucine synthesis in Corynebacterium glutamicum: molecular analysis of the ilvB-ilvN-ilvC operon

  1993cited by this paper
• Transcriptional regulation by cAMP and its receptor protein.

  1993cited by this paper
• Cyclic AMP in prokaryotes

  1992cited by this paper
• [A Survey of Exact Inference for Contingency Tables]: Rejoinder

  1992cited by this paper
• Uptake of glutamate in Corynebacterium glutamicum. 1. Kinetic properties and regulation by internal pH and potassium.

  1990cited by this paper
• Uptake of glutamate in Corynebacterium glutamicum. 2. Evidence for a primary active transport system.

  1990cited by this paper
• Cyclic AMP in prokaryotes.

  1974cited by this paper
• Identification and Characterization of glxR , a Gene Involved in Regulation of Glyoxylate Bypass in Corynebacterium glutamicum

  year unknowninfluential reference

• Engineering Dual-Input Glucose- and Temperature-Sensitive Lysis Circuits in Corynebacterium glutamicum for Efficient Intracellular Product Recovery

  2025cites this paper
• Growth of Corynebacterium glutamicum on 5-oxo-L-proline (pyroglutamate) as carbon and nitrogen source requires the PxpR-controlled pxpTABC genes

  2025cites this paper
• ALE reveals a surprising link between [Fe-S] cluster formation, tryptophan biosynthesis and the potential regulatory protein TrpP in Corynebacterium glutamicum

  2025cites this paper
• Transcription factor based whole-cell biosensor for inosinic acid in Corynebacterium stationis

  2024cites this paper
• Harnessing regulatory networks in Actinobacteria for natural product discovery

  2024cites this paper
• Structural and functional diversity of bacterial cyclic nucleotide perception by CRP proteins

  2023cites this paper
• Robotic workflows for automated long-term adaptive laboratory evolution: improving ethanol utilization by Corynebacterium glutamicum

  2023cites this paper
• Expanding the FurC (PerR) regulon in Anabaena (Nostoc) sp. PCC 7120: Genome-wide identification of novel direct targets uncovers FurC participation in central carbon metabolism regulation

  2023cites this paper
• Structural Basis of Dual Specificity of Sinorhizobium meliloti Clr, a cAMP and cGMP Receptor Protein

  2023cites this paper
• Stepwise metabolic engineering of Corynebacterium glutamicum for the production of phenylalanine.

  2022cites this paper
• Structural basis of bifunctionality of Sinorhizobium meliloti Clr, a cAMP and cGMP receptor protein

  2022cites this paper
• Transcriptional Regulation of the Creatine Utilization Genes of Corynebacterium glutamicum ATCC 14067 by AmtR, a Central Nitrogen Regulator

  2022cites this paper
• The PhoPR two-component system responds to oxygen deficiency and regulates the pathways for energy supply in Corynebacterium glutamicum

  2021cites this paper
• OsnR is an autoregulatory negative transcription factor controlling redox-dependent stress responses in Corynebacterium glutamicum

  2021cites this paper
• Molecular Basis of Growth Inhibition by Acetate of an Adenylate Cyclase-Deficient Mutant of Corynebacterium glutamicum

  2020cites this paper
• Global Transcriptional Regulators Involved in Carbon, Nitrogen, Phosphorus, and Sulfur Metabolisms in Corynebacterium glutamicum

  2020cites this paper
• The Iron Deficiency Response of Corynebacterium glutamicum and a Link to Thiamine Biosynthesis

  2020cites this paper
• Regulation of γ-Aminobutyrate (GABA) Utilization in Corynebacterium glutamicum by the PucR-Type Transcriptional Regulator GabR and by Alternative Nitrogen and Carbon Sources

  2020cites this paper
• Thiol-specific Oxidant Diamide Downregulates whiA Gene of Corynebacterium glutamicum, thereby Suppressing Cell Division and Metabolism.

  2020cites this paper
• Schlussbericht

  2019cites this paper
• Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA

  2019cites this paper
• Essential Nucleoid Associated Protein mIHF (Rv1388) Controls Virulence and Housekeeping Genes in Mycobacterium tuberculosis

  2018cites this paper
• Rv3852 (H-NS) of Mycobacterium tuberculosis Is Not Involved in Nucleoid Compaction and Virulence Regulation

  2017cites this paper
• The linkage between nutrient supply, intracellular enzyme abundances and bacterial growth: New evidences from the central carbon metabolism of Corynebacterium glutamicum.

  2017cites this paper
• Identification of the cAMP phosphodiesterase CpdA as novel key player in cAMP‐dependent regulation in Corynebacterium glutamicum

  2017cites this paper
• Engineering of Scale-Down Bioreactor Setup: Deciphering Metabolic Phenotype of Corynebacterium glutamicum under Simulated Bioreactor Inhomogeneity

  2017cites this paper
• Development of a single-cell GlxR-based cAMP biosensor for Corynebacterium glutamicum.

  2017cites this paper
• Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803

  2017cites this paper
• Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species

  2017cites this paper
• Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage.

  2016cites this paper
• Regulation of a muralytic resuscitation-promoting factor in Streptomyces coelicolor

  2016influential citation
• Biotypes analysis of Corynebacterium glutamicum growing in dicarboxylic acids demonstrates the existence of industrially-relevant intra-species variations.

  2016cites this paper
• The small 6C RNA of Corynebacterium glutamicum is involved in the SOS response

  2016cites this paper
• Transcription of Sialic Acid Catabolism Genes in Corynebacterium glutamicum Is Subject to Catabolite Repression and Control by the Transcriptional Repressor NanR

  2016cites this paper
• Transcriptional Analysis of the MrpJ Network: Modulation of Diverse Virulence-Associated Genes and Direct Regulation of mrp Fimbrial and flhDC Flagellar Operons in Proteus mirabilis

  2015cites this paper
• Identification of the Regulators Binding to the Upstream Region of glxR in Corynebacterium glutamicum.

  2015cites this paper
• Biosensor-driven adaptive laboratory evolution of l-valine production in Corynebacterium glutamicum.

  2015cites this paper
• Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria

  2015cites this paper
• Mapping the CgrA regulon of Rhodospirillum centenum reveals a hierarchal network controlling Gram-negative cyst development

  2015cites this paper
• Regulation of the pstSCAB operon in Corynebacterium glutamicum by the regulator of acetate metabolism RamB

  2015cites this paper
• CMRegNet–An interspecies reference database for corynebacterial and mycobacterial regulatory networks

  2015cites this paper
• Regulons of global transcription factors in Corynebacterium glutamicum

  2015influential citation
• Transcriptional Regulation of the Vanillate Utilization Genes (vanABK Operon) of Corynebacterium glutamicum by VanR, a PadR-Like Repressor

  2014cites this paper
• The Crystal Structures of Apo and cAMP-Bound GlxR from Corynebacterium glutamicum Reveal Structural and Dynamic Changes upon cAMP Binding in CRP/FNR Family Transcription Factors

  2014cites this paper
• ChIP analysis unravels an exceptionally wide distribution of DNA binding sites for the NtcA transcription factor in a heterocyst-forming cyanobacterium

  2014cites this paper
• Trehalose Transport in Corynebacterium glutamicum and its Significance for Cell Envelope Synthesis

  2014cites this paper
• Role of Corynebacterium glutamicum sprA Encoding a Serine Protease in glxR-Mediated Global Gene Regulation

  2014cites this paper
• Elucidating the virulence control network in Francisella tularensis

  2014cites this paper
• Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032

  2013cites this paper
• Emerging tools for synthetic genome design

  2013cites this paper
• Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicum

  2013cites this paper
• Identification of the direct regulon of NtcA during early Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803 Synechocystis sp. PCC 6803

  year unknowncites this paper