Large Subunit Mitochondrial rRNA Secondary Structures and Site-Specific Rate Variation in Two Lizard Lineages

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Journal of Molecular Evolution

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1007/s00239-004-0119-3PMID 15696367
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Models of the primary and secondary structure for the 12S rRNA of birds: a guideline for sequence alignment.

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• Phylogeny of the lizard subfamily Lygosominae (Reptilia: Scincidae), with special reference to the origin of the new world taxa.

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• Models of the Primary and Secondary Structure for the 12S rRNA of Birds: A Guideline for Sequence Alignment

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• Phylogenetic relationships and limb loss in sub-Saharan African scincine lizards (Squamata: Scincidae).

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• Phylogenetic Affinities of Mabuya atlantica Schmidt, 1945, Endemic to the Atlantic Ocean Archipelago of Fernando de Noronha (Brazil): Necessity of Partitioning the Genus Mabuya Fitzinger, 1826 (Scincidae: Lygosominae)

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• Molecular phylogeny and biogeography of the grass lizards genus Takydromus (Reptilia: Lacertidae) of East Asia.

  2002cited by this paper
• An Empirical Analysis of mt 16S rRNA Covarion-Like Evolution in Insects: Site-Specific Rate Variation Is Clustered and Frequently Detected

  2002influential reference
• MRBAYES: Bayesian inference of phylogenetic trees

  2001influential reference
• RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods.

  2001influential reference
• Maximum-likelihood phylogenetic analysis under a covarion-like model.

  2001influential reference
• Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

  2001influential reference
• The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

  2000cited by this paper
• Comparative sequence analysis and patterns of covariation in RNA secondary structures.

  2000cited by this paper
• Toward the phylogeny of the family Lacertidae - Why 4708 base pairs of mtDNA sequences cannot draw the picture

  2000cited by this paper
• 2SB5 The complete atomic structure of the large ribosomal subunit from Haloarcula marismortui

  2000cited by this paper
• Phylogenetic relationships, character evolution, and biogeography of the subfamily Lygosominae (Reptilia: Scincidae) inferred from mitochondrial DNA sequences.

  2000cited by this paper
• The Ribosome Is a Ribozyme

  2000cited by this paper
• The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence.

  2000cited by this paper
• First data on the molecular phylogeography of scincid lizards of the genus Mabuya.

  2000cited by this paper
• Secondary structure and conserved motifs of the frequently sequenced domains IV and V of the insect mitochondrial large subunit rRNA gene

  2000cited by this paper
• The European Large Subunit Ribosomal RNA database

  2000influential reference
• RNA secondary structure prediction based on free energy and phylogenetic analysis.

  1999cited by this paper
• Rapid speciation, morphological evolution, and adaptation to extreme environments in South African sand lizards (Meroles) as revealed by mitochondrial gene sequences.

  1998cited by this paper
• Relationships of lacertid lizards (Reptilia: Lacertidae) estimated from mitochondrial DNA sequences and morphology

  1998cited by this paper
• MODELTEST: testing the model of DNA substitution

  1998cited by this paper
• Toward the phylogeny of the family Lacertidae: implications from mitochondrial DNA 12S and 16S gene sequences (Reptilia: Squamata).

  1998cited by this paper
• PAML: a program package for phylogenetic analysis by maximum likelihood

  1997influential reference
• Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs.

  1995cited by this paper
• Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods

  1994cited by this paper
• Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

  1993cited by this paper
• Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis.

  1993cited by this paper
• The general stochastic model of nucleotide substitution.

  1990cited by this paper
• On finding all suboptimal foldings of an RNA molecule.

  1989cited by this paper
• A compilation of large subunit RNA sequences presented in a structural format.

  1988cited by this paper
• Comparative anatomy of 16-S-like ribosomal RNA.

  1985cited by this paper
• THE EFFECT OF DIGITALIS ON THE CARDIAC OUT-PUT OF DOGS AND ITS BEARING ON THE ACTION OF THE DRUG IN HEART DISEASE.

  1926cited by this paper

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  2022cites this paper
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  2020cites this paper
• The Taxonomic Status of Lacerta composita Méhely, 1909 (Squamata: Sauria: Lacertidae)

  2018cites this paper
• UvA-DARE ( Digital Academic Repository ) Geographical patterns of deep mitochondrial differentiation in widespread Malagasy reptiles

  2017cites this paper
• Genetic diversity and phylogeography of the blacklegged tick, Ixodes scapularis, and an associated bacterium, Anaplasma phagocytophilum

  2015cites this paper
• Phylogeny and divergence times of some racerunner lizards (Lacertidae: Eremias) inferred from mitochondrial 16S rRNA gene segments.

  2011influential citation
• Elevated evolutionary rate in genes with homopolymeric amino acid repeats constituting nondisordered structure.

  2011cites this paper
• Divergence times and colonization of the Canary Islands by Gallotia lizards.

  2010cites this paper
• The hidden diversity of Coleodactylus amazonicus (Sphaerodactylinae, Gekkota) revealed by molecular data.

  2010cites this paper
• Bayesian estimation of post-Messinian divergence times in Balearic Island lizards.

  2008cites this paper
• Variation patterns of the mitochondrial 16S rRNA gene with secondary structure constraints and their application to phylogeny of cyprinine fishes (Teleostei: Cypriniformes).

  2008cites this paper
• A mixed branch length model of heterotachy improves phylogenetic accuracy.

  2008cites this paper
• Heterotachy and tree building: a case study with plastids and eubacteria.

  2006cites this paper
• A tale of two processes.

  2005cites this paper