Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis.

No abstract is available for this paper.

• Publication year

  2003

• Venue

  The Plant Journal

• Publication date

  2003-10-01

• Fields of study

  Biology, Medicine, Engineering, Environmental Science

• Identifiers
  DOI 10.1046/J.1365-313X.2003.01861.XPMID 12974817
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Age‐dependent genetic effects on a secondary sexual trait in male Alpine ibex, Capra ibex

  2007cited by this paper
• Methods for genotyping single nucleotide polymorphisms.

  2003cited by this paper
• The utility of single nucleotide polymorphisms in inferences of population history

  2003cited by this paper
• Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.

  2003cited by this paper
• Arabidopsis Map-Based Cloning in the Post-Genome Era

  2002cited by this paper
• Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana.

  2002cited by this paper
• ARACHNE: a whole-genome shotgun assembler.

  2002cited by this paper
• High-throughput gene mapping in Caenorhabditis elegans.

  2002cited by this paper
• The extent of linkage disequilibrium in Arabidopsis thaliana

  2002cited by this paper
• MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome

  2002cited by this paper
• Automation in genotyping of single nucleotide polymorphisms

  2001cited by this paper
• Genetic mapping with SNP markers in Drosophila

  2001cited by this paper
• A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis.

  2000cited by this paper
• Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

  2000cited by this paper
• Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse

  2000cited by this paper
• High-throughput genetic mapping in Arabidopsis thaliana

  1999cited by this paper
• From gels to chips: “Minisequencing” primer extension for analysis of point mutations and single nucleotide polymorphisms

  1999cited by this paper
• A complete BAC-based physical map of the Arabidopsis thaliana genome

  1999cited by this paper
• Genome-wide mapping with biallelic markers in Arabidopsis thaliana

  1999cited by this paper
• Genetic variation within and among populations of Arabidopsis thaliana.

  1998cited by this paper
• Intra- and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species.

  1998cited by this paper
• MALDI on a Chip: Analysis of Arrays of Low-Femtomole to Subfemtomole Quantities of Synthetic Oligonucleotides and DNA Diagnostic Products Dispensed by a Piezoelectric Pipet

  1997cited by this paper
• The use of a genetic map of biallelic markers in linkage studies

  1997cited by this paper
• Multiplex genotyping of PCR products with MassTag-labeled primers.

  1997cited by this paper
• Positional cloning moves from perditional to traditional

  1995cited by this paper
• Genetic dissection of complex traits.

  1994cited by this paper
• Single nucleotide primer extension to detect genetic diseases: experimental application to hemophilia B (factor IX) and cystic fibrosis genes.

  1991cited by this paper
• The estimation of map distances from recombination values.

  1943cited by this paper

• Computational analysis on non-synonymous single nucleotide polymorphisms (nsSNPs) in L-type lectin receptor kinases (LECRK) protein in Arabidopsis Thaliana.

  2025cites this paper
• Development of SLAF-Sequence and Multiplex SNaPshot Panels for Population Genetic Diversity Analysis and Construction of DNA Fingerprints for Sugarcane

  2022cites this paper
• Genetic controls of short- and long-term stomatal CO2 responses in Arabidopsis thaliana

  2020cites this paper
• Identification of TaPPH-7A haplotypes and development of a molecular marker associated with important agronomic traits in common wheat

  2019cites this paper
• Genetic characterisation and fine mapping of sources of durable resistance to stripe rust in selected wheat genotypes

  2018cites this paper
• Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses

  2017cites this paper
• A set of Columbia-0-specific single nucleotide polymorphism markers for the genetic analysis of natural variation in Arabidopsis thaliana

  2017cites this paper
• QTL analysis of the developmental response to L-glutamate in Arabidopsis roots and its genotype-by-environment interactions

  2017cites this paper
• Genetic dissection of metabolite variation in Arabidopsis seeds: evidence for mQTL hotspots and a master regulatory locus of seed metabolism

  2017cites this paper
• Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping

  2016cites this paper
• Arabidopsis Genome Initiative

  2016cites this paper
• Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6

  2015cites this paper
• Seed dispersal in time can counteract the effect of gene flow between natural populations of Arabidopsis thaliana.

  2014cites this paper
• Global changes in gene expression, assayed by microarray hybridization and quantitative RT-PCR, during acclimation of three Arabidopsis thaliana accessions to sub-zero temperatures after cold acclimation

  2014cites this paper
• Self-Incompatibility in the Brassicaceae

  2014cites this paper
• Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits

  2013cites this paper
• SNP Genotyping Technologies

  2013cites this paper
• Diagnostics in Plant Breeding

  2013cites this paper
• Mutations in the Arabidopsis RPK1 gene uncouple cotyledon anlagen and primordia by modulating epidermal cell shape and polarity

  2013cites this paper
• A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions

  2012cites this paper
• A TILLING resource for functional genomics in Arabidopsis thaliana accession C24.

  2012cites this paper
• The Ncm-1 gene for resistance to Cucumber mosaic virus in yellow lupin (Lupinus luteus): molecular studies and marker development

  2012cites this paper
• Metabolism and Growth in Arabidopsis Depend on the Daytime Temperature but Are Temperature-Compensated against Cool Nights[W][OA]

  2012cites this paper
• A Novel Class of Simple PCR Markers with SNP-Level Sensitivity for Mapping and Haplotype Characterization in Solanum Species

  2011cites this paper
• Source verification of mis-identified Arabidopsis thaliana accessions.

  2011cites this paper
• Allele mining and haplotype discovery in barley candidate genes for drought tolerance

  2011cites this paper
• Evolutionary consequences of seed banks and seed dispersal in Arabidopsis

  2011cites this paper
• A RESTORER OF FERTILITY-like PPR gene is required for 5'-end processing of the nad4 mRNA in mitochondria of Arabidopsis thaliana.

  2011cites this paper
• Fast-forward genetics enabled by new sequencing technologies.

  2011cites this paper
• Overview of Teaching Activities

  2011cites this paper
• Mining and Identification of SNPs from EST Sequences in Soybean and Converting SNP markers into CAPS

  2010cites this paper
• Using Genomics to Exploit Grain Legume Biodiversity in Crop Improvement

  2010cites this paper
• Mining and Identification of SNP from EST Sequences and Convertion of CAPS Markers in Soybean: Mining and Identification of SNP from EST Sequences and Convertion of CAPS Markers in Soybean

  2010cites this paper
• Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions[C][W][OA]

  2010cites this paper
• IDENTIFICATION OF QTL FOR TRAITS RELATED TO DROUGHT TOLERANCE USING RIL MAPPING POPULATION IN RICE

  2010cites this paper
• Relationship between Single Nucleotide Polymorphism of TaPK7 Gene and Drought Tolerance in Wheat: Relationship between Single Nucleotide Polymorphism of TaPK7 Gene and Drought Tolerance in Wheat

  2009cites this paper
• Predicting Arabidopsis Freezing Tolerance and Heterosis in Freezing Tolerance from Metabolite Composition

  2009cites this paper
• Prediction of hybrid biomass in Arabidopsis thaliana by selected parental SNP and metabolic markers

  2009cites this paper
• QTL analysis of early stage heterosis for biomass in Arabidopsis

  2009cites this paper
• Improved Heterosis Prediction by Combining Information on DNA- and Metabolic Markers

  2009cites this paper
• Seed banks cause elevated generation times and effective population sizes of Arabidopsis thaliana in northern Europe

  2009influential citation
• New technologies for ultra-high throughput genotyping in plants.

  2009cites this paper
• Development and Application of Functional Markers

  2009cites this paper
• Development of soybean gene-driven functional CAPS markers based on gene resequencing.

  2009cites this paper
• Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations.

  2009cites this paper
• High-throughput SNP Genotyping by Melting Curve Analysis for Resistance to Southern Root-knot Nematode and Frogeye Leaf Spot in Soybean

  2008cites this paper
• Functional markers in wheat: technical and economic aspects

  2008cites this paper
• Construction and analysis of 2 reciprocal Arabidopsis introgression line populations.

  2008cites this paper
• High-resolution, high-throughput SNP mapping in Drosophila melanogaster

  2008cites this paper
• Mitochondrial mRNA Polymorphisms in Different Arabidopsis Accessions1[W][OA]

  2008cites this paper
• EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome

  2008cites this paper
• Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance

  2008cites this paper
• Natural Genetic Variation of Arabidopsis thaliana Is Geographically Structured in the Iberian Peninsula

  2008cites this paper
• Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana

  2008cites this paper
• Web-Based Arabidopsis Functional and Structural Genomics Resources

  2008cites this paper
• Natural genetic variation in acclimation capacity at sub-zero temperatures after cold acclimation at 4 degrees C in different Arabidopsis thaliana accessions.

  2008cites this paper
• Analysis of two single trait loci affecting flavonol glycoside accumulations in Arabidopsis thaliana natural variations

  2007cites this paper
• Single Nucleotide Polymorphism Genotyping in Plants

  2007cites this paper
• Genetic Basis of Heterosis for Growth-Related Traits in Arabidopsis Investigated by Testcross Progenies of Near-Isogenic Lines Reveals a Significant Role of Epistasis

  2007cites this paper
• Heterosis for Biomass-Related Traits in Arabidopsis Investigated by Quantitative Trait Loci Analysis of the Triple Testcross Design With Recombinant Inbred Lines

  2007cites this paper
• Arabidopsis root hair development in adaptation to iron and phosphate supply

  2007cites this paper
• Indel arrays: an affordable alternative for genotyping.

  2007cites this paper
• Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations

  2007influential citation
• Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase.

  2007cites this paper
• New Arabidopsis Recombinant Inbred Line Populations Genotyped Using SNPWave and Their Use for Mapping Flowering-Time Quantitative Trait Loci

  2006cites this paper
• Variation of Enzyme Activities and Metabolite Levels in 24 Arabidopsis Accessions Growing in Carbon-Limited Conditions1[W]

  2006cites this paper
• CapsID: a web-based tool for developing parsimonious sets of CAPS molecular markers for genotyping

  2006cites this paper
• Gene identification and cloning by molecular marker mapping.

  2006cites this paper
• Using information from public Arabidopsis databases to aid research.

  2006cites this paper
• An SSR-based linkage map of Capsicum annuum

  2006cites this paper
• Fine mapping of the bolting gene of sugar beet (Beta vulgaris L.) using BAC-derived sequences

  2006cites this paper
• Running title: Natural variation in carbon-limiting conditions

  2006influential citation
• Segregation distortion in Arabidopsis C24/Col-0 and Col-0/C24 recombinant inbred line populations is due to reduced fertility caused by epistatic interaction of two loci

  2006influential citation
• Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers

  2006influential citation
• Practical strategy for identification of single nucleotide polymorphisms in fruiting mei (Prunus mume Sieb. et zucc.) from amplified fragment length polymorphism fragments

  2005cites this paper
• Reduced Representation Strategies and Their Application to Plant Genomes

  2005cites this paper
• Plant performance: a physiological and genetic analysis using Arabidopsis thaliana natural variation

  2005influential citation
• Beyond Complementation. Map-Based Cloning in Chlamydomonas reinhardtii1[w]

  2005cites this paper
• Genotyping single nucleotide polymorphisms by MALDI mass spectrometry in clinical applications.

  2005cites this paper
• Bacterial artificial chromosome-derived molecular markers for early bolting in sugar beet

  2005cites this paper
• A rapid and versatile combined DNA/RNA extraction protocol and its application to the analysis of a novel DNA marker set polymorphic between Arabidopsis thaliana ecotypes Col-0 and Landsberg erecta

  2005cites this paper
• Rapid Array Mapping of Circadian Clock and Developmental Mutations in Arabidopsis1

  2005cites this paper
• Role of FRIGIDA and FLOWERING LOCUS C in Determining Variation in Flowering Time of Arabidopsis1[w]

  2005cites this paper
• Desenvolvimento e uso de marcadores microssatélites para construção e integração de mapas genéticos de maracujá-amarelo (Passiflora edulis Sims f. flavicarpa Deg.)

  2005cites this paper
• Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana

  2005cites this paper
• Marker Assisted Identification And Introgression Of Productivity Related Qtls From Wild Species Into Cultivated Rice Oryza Sativa L.

  2005cites this paper
• Systems Rebalancing of Metabolism in Response to Sulfur Deprivation, as Revealed by Metabolome Analysis of Arabidopsis Plants1[w]

  2005cites this paper
• New Arabidopsis recombinant inbred line populations genotyped using SNPWave™ and their use for mapping flowering time QTLs.

  2005cites this paper
• Allele-specific CAPS markers based on point mutations in resistance alleles at the pvr1 locus encoding eIF4E in Capsicum

  2005cites this paper
• A Global Survey of Gene Regulation during Cold Acclimation in Arabidopsis thaliana

  2005cites this paper
• From Markers to Cloned Genes: Map-Based Cloning

  2004cites this paper
• An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.

  2004cites this paper
• Natural genetic variation in Arabidopsis identifies BREVIS RADIX, a novel regulator of cell proliferation and elongation in the root.

  2004cites this paper
• BlastDigester--a web-based program for efficient CAPS marker design.

  2004cites this paper
• Heterosis in the freezing tolerance of crosses between two Arabidopsis thaliana accessions (Columbia-0 and C24) that show differences in non-acclimated and acclimated freezing tolerance.

  2004cites this paper
• Heterosis of Biomass Production in Arabidopsis. Establishment during Early Development1

  2004influential citation
• Nested core collections maximizing genetic diversity in Arabidopsis thaliana.

  2004cites this paper
• Multiplexed, linkage group-specific SNP marker sets for rapid genetic mapping and fingerprinting of sugar beet (Beta vulgaris L.)

  2004cites this paper
• Natural genetic variation in Arabidopsis identifies BREVIS RADIX , a novel regulator of cell proliferation and elongation in the root

  2004cites this paper
• Multiplexed, linkage group-specific SNP marker sets for rapid genetic mapping and fingerprinting of sugar beet (Beta vulgaris L.)

  2004cites this paper