Computational design and structure dynamics analysis of bifunctional chimera of endoxylanase from Clostridium thermocellum and xylosidase from Bacteroides ovatus

No abstract is available for this paper.

• Publication year

  2023

• Venue

  3 Biotech

• Publication date

  2023-01-25

• Fields of study

  Medicine, Chemistry, Engineering, Environmental Science

• Identifiers
  DOI 10.1007/s13205-023-03482-6PMID 36714550PMCID PMC9877272
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2021influential reference
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  2018cited by this paper
• MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

  2016cited by this paper
• The Phyre2 web portal for protein modeling, prediction and analysis

  2015cited by this paper
• Clustal Omega

  2014cited by this paper
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  2014cited by this paper
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  2012cited by this paper
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  2011cited by this paper
• AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

  2009cited by this paper
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  2009cited by this paper
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  2009cited by this paper
• DOG 1.0: illustrator of protein domain structures

  2009cited by this paper
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  2008cited by this paper
• CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

  2006cited by this paper
• α-l-Arabinofuranosidases: the potential applications in biotechnology

  2006cited by this paper
• Automatic atom type and bond type perception in molecular mechanical calculations.

  2006cited by this paper
• Alpha-L-arabinofuranosidases: the potential applications in biotechnology.

  2006cited by this paper
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  2005cited by this paper
• Protein surface analysis for function annotation in high‐throughput structural genomics pipeline

  2005cited by this paper
• UCSF Chimera—A visualization system for exploratory research and analysis

  2004cited by this paper
• PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

  2004cited by this paper
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  2003cited by this paper
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  2003cited by this paper
• Hemicellulose bioconversion

  2003cited by this paper
• The PyMOL Molecular Graphics System

  2002influential reference
• VERIFY3D: assessment of protein models with three-dimensional profiles.

  1997cited by this paper
• LINCS: A linear constraint solver for molecular simulations

  1997cited by this paper
• The GROMOS96 Manual and User Guide

  1996influential reference
• GROMACS: A message-passing parallel molecular dynamics implementation

  1995cited by this paper
• Verification of protein structures: Patterns of nonbonded atomic interactions

  1993cited by this paper
• PROCHECK: a program to check the stereochemical quality of protein structures

  1993cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.

  1987cited by this paper
• The neighbor-joining method : A new method for reconstructing phylogenetic trees

  1987cited by this paper
• Crystal structure and pair potentials: A molecular-dynamics study

  1980influential reference
• STEREOCHEMISTRY AND THE MECHANISM OF ENZYMATIC REACTIONS

  1953cited by this paper

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