Comparison of single‐nucleotide polymorphisms and microsatellite markers for linkage analysis in the COGA and simulated data sets for Genetic Analysis Workshop 14: Presentation Groups 1, 2, and 3

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Genetic Epidemiology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Geography, Medicine

• Identifiers
  DOI 10.1002/gepi.20106PMID 16342186
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  1987influential reference

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