Chaperone networks in bacteria: analysis of protein homeostasis in minimal cells.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Journal of Structural Biology

• Publication date

  2004-04-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/J.JSB.2003.11.006PMID 15037239
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Database resources of the National Center for Biotechnology

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