Novel chromosomes and genomes provide new insights into evolution and adaptation of the whole genome duplicated yeast-like fungus TN3-1 isolated from natural honey

No abstract is available for this paper.

• Publication year

  2023

• Venue

  Functional & Integrative Genomics

• Publication date

  2023-06-19

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s10142-023-01127-8PMID 37335429
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The ornithine-urea cycle involves fumaric acid biosynthesis in Aureobasidium pullulans var. aubasidani, a green and eco-friendly process for fumaric acid production

  2022cited by this paper
• The signaling pathways involved in metabolic regulation and stress responses of the yeast-like fungi Aureobasidium spp.

  2021influential reference
• Fungi in mangrove ecosystems and their potential applications

  2020cited by this paper
• Glycerol, trehalose and vacuoles had relations to pullulan synthesis and osmotic tolerance by the whole genome duplicated strain Aureobasidium melanogenum TN3-1 isolated from natural honey.

  2020influential reference
• Comparative genome analysis proposes three new Aureobasidium species isolated from grape juice.

  2020cited by this paper
• Genetic evidences for the core biosynthesis pathway, regulation, transport and secretion of liamocins in yeast-like fungal cells.

  2020influential reference
• The differences between fungal α-glucan synthase determining pullulan synthesis and that controlling cell wall α-1,3 glucan synthesis.

  2020influential reference
• Overproduction of a β-fructofuranosidase1 with a high FOS synthesis activity for efficient biosynthesis of fructooligosaccharides.

  2019cited by this paper
• Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

  2019cited by this paper
• Improved pullulan production by a mutant of Aureobasidium melanogenum TN3-1 from a natural honey and capsule shell preparation.

  2019influential reference
• Melanin biosynthesis in the desert-derived Aureobasidium melanogenum XJ5-1 is controlled mainly by the CWI signal pathway via a transcriptional activator Cmr1

  2019cited by this paper
• Fifty Aureobasidium pullulans genomes reveal a recombining polyextremotolerant generalist

  2019influential reference
• Macromolecular pullulan produced by Aureobasidium melanogenum 13-2 isolated from the Taklimakan desert and its crucial roles in resistance to the stress treatments.

  2019cited by this paper
• High pullulan biosynthesis from high concentration of glucose by a hyperosmotic resistant, yeast-like fungal strain isolated from a natural comb-honey.

  2019influential reference
• Eukaryotic Genome Organization, Regulation, Evolution and Control

  2019influential reference
• Genome sequencing of a yeast-like fungal strain P6, a novel species of Aureobasidium spp.: insights into its taxonomy, evolution, and biotechnological potentials

  2019cited by this paper
• A novel PMA synthetase is the key enzyme for polymalate biosynthesis and its gene is regulated by a calcium signaling pathway in Aureobasidium melanogenum ATCC62921.

  2019cited by this paper
• A multidomain α-glucan synthase 2 (AmAgs2) is the key enzyme for pullulan biosynthesis in Aureobasidium melanogenum P16.

  2019influential reference
• Genome and Genomics: From Archaea to Eukaryotes

  2019cited by this paper
• Simultaneous production of single cell oil and fumaric acid by a newly isolated yeast Aureobasidium pullulans var. aubasidani DH177

  2018cited by this paper
• Efficient transformation of sucrose into high pullulan concentrations by Aureobasidium melanogenum TN1-2 isolated from a natural honey.

  2018cited by this paper
• The opium poppy genome and morphinan production

  2018cited by this paper
• Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast

  2018cited by this paper
• Genome sequencing of Aureobasidium pullulans P25 and overexpression of a glucose oxidase gene for hyper-production of Ca2+-gluconic acid

  2018cited by this paper
• Epigenetic and Posttranslational Modifications in Regulating the Biology of Aspergillus Species.

  2018influential reference
• An insight into the iron acquisition and homeostasis in Aureobasidium melanogenum HN6.2 strain through genome mining and transcriptome analysis

  2018cited by this paper
• Going under down under? Lineage ages argue for extensive survival of the Oligocene marine transgression on Zealandia

  2018cited by this paper
• Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation.

  2017cited by this paper
• CreA is directly involved in pullulan biosynthesis and regulation of Aureobasidium melanogenum P16

  2016cited by this paper
• Hi-C 2.0: An Optimized Hi-C Procedure for High-Resolution Genome-Wide Mapping of Chromosome Conformation

  2016influential reference
• Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid

  2016influential reference
• Polyploidy can drive rapid adaptation in yeast

  2015cited by this paper
• Clonal reproduction in fungi

  2015cited by this paper
• Genetic diversity of medically important and emerging Candida species causing invasive infection

  2015cited by this paper
• PacBio Sequencing and Its Applications

  2015cited by this paper
• BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

  2015cited by this paper
• Taxonomy of Aureobasidium spp. and biosynthesis and regulation of their extracellular polymers

  2015cited by this paper
• Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

  2014cited by this paper
• Glucose- and nitrogen sensing and regulatory mechanisms in Saccharomyces cerevisiae.

  2014cited by this paper
• High-level pullulan production by Aureobasidium pullulans var. melanogenium P16 isolated from mangrove system

  2014cited by this paper
• Whole Genome Duplication and Enrichment of Metal Cation Transporters Revealed by De Novo Genome Sequencing of Extremely Halotolerant Black Yeast Hortaea werneckii

  2013cited by this paper
• Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

  2013influential reference
• Identification of Telomerase RNAs from Filamentous Fungi Reveals Conservation with Vertebrates and Yeasts

  2013cited by this paper
• Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway

  2012cited by this paper
• Transposon integration enhances expression of stress response genes

  2012cited by this paper
• Polyploidy in fungi: evolution after whole-genome duplication

  2012influential reference
• Dynamic interactions between transposable elements and their hosts

  2011cited by this paper
• Telomeres: protecting chromosomes against genome instability

  2010cited by this paper
• Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

  2009influential reference
• Recent allopolyploid origin of Zygosaccharomyces rouxii strain ATCC 42981

  2008cited by this paper
• PAML 4: phylogenetic analysis by maximum likelihood.

  2007cited by this paper
• Diagnostic molecular biology.

  2006cited by this paper
• Stability of Large Segmental Duplications in the Yeast Genome

  2006cited by this paper
• Severe Adenine Starvation Activates Ty1 Transcription and Retrotransposition in Saccharomyces cerevisiae

  2005cited by this paper
• Leucine-Rich Repeats (LRRs): Structure, Function, Evolution and Interaction with Ligands

  2005cited by this paper
• From the Cover : Accelerated telomere shortening in response to life stress

  2004cited by this paper
• Use of nitrate non-utilising (Nit) mutants to determine vegetative compatibility in Botryotinia fuckeliana (Botrytis cinerea)

  2003cited by this paper
• Origin of a polyploid Botrytis pathogen through interspecific hybridization between Botrytis aclada and B. byssoidea

  2001cited by this paper
• Molecular evidence for an ancient duplication of the entire yeast genome

  1997cited by this paper
• Enological Fermentation Kinetics of an Isogenic Ploidy Series Derived from an Industrial Saccharomyces cerevisiae Strain

  1997cited by this paper
• A proposed revision of the genus Pullularia.

  1956influential reference

• Genome mining the black-yeast Aureobasidium pullulans NRRL 62031 for biotechnological traits

  2025cites this paper
• From hive to laboratory – biotechnological potential of microorganisms from honey

  2025cites this paper
• Biotechnological application of Aureobasidium spp. as a promising chassis for biosynthesis of ornithine-urea cycle-derived bioproducts

  2024cites this paper
• Genomic analysis and mechanisms exploration of a stress tolerance and high-yield pullulan producing strain

  2024cites this paper