Evolutionary analysis of seasonal influenza A viruses in Pakistan 2020–2023

Influenza A viruses cause global health concerns due to their high amino acid substitution rates. They are linked to yearly seasonal epidemics and occasional pandemics. This study focused on sequencing influenza A virus strains in Pakistan.

• Publication year

  2024

• Venue

  Influenza and Other Respiratory Viruses

• Publication date

  2024-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/irv.13262PMID 38387887PMCID 10883786
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Culture-Independent Workflow for Nanopore MinION-Based Sequencing of Influenza A Virus

  2023cited by this paper
• 2019–2020 H1N1 clade A5a.1 viruses have better in vitro fitness compared with the co-circulating A5a.2 clade

  2023cited by this paper
• Interim influenza vaccine effectiveness estimates during the 2023 Southern Hemisphere season

  2023cited by this paper
• Interim Estimates of 2022–23 Seasonal Influenza Vaccine Effectiveness — Wisconsin, October 2022–February 2023

  2023cited by this paper
• The genetic characterization of hemagglutinin (HA), neuraminidase (NA) and polymerase acidic (PA) genes of H3N2 influenza viruses circulated in Guangdong Province of China during 2019–2020

  2022cited by this paper
• Evaluation of the added value of viral genomic information for predicting severity of influenza infection

  2021cited by this paper
• Nextclade: clade assignment, mutation calling and quality control for viral genomes

  2021cited by this paper
• Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses

  2020cited by this paper
• Atypical influenza A(H1N1)pdm09 strains caused an influenza virus outbreak in Saudi Arabia during the 2009-2011 pandemic season.

  2019cited by this paper
• Whole Genome Sequencing of Influenza A and B Viruses With the MinION Sequencer in the Clinical Setting: A Pilot Study

  2018cited by this paper
• Evaluation of Lab-based Influenza Surveillance System in Pakistan, 2017

  2018cited by this paper
• Molecular and epidemiological analysis of pandemic and post‐pandemic influenza A(H1N1)pdm09 virus from central India

  2018cited by this paper
• NanoPack: visualizing and processing long-read sequencing data

  2018cited by this paper
• Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses

  2017cited by this paper
• GISAID: Global initiative on sharing all influenza data – from vision to reality

  2017cited by this paper
• Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015–2016

  2017cited by this paper
• Estimates of global seasonal influenza-associated respiratory mortality: a modelling study.

  2017cited by this paper
• The evolution of seasonal influenza viruses

  2017cited by this paper
• W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

  2016cited by this paper
• Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans

  2016cited by this paper
• Next-Generation Sequencing and Influenza Virus: A Short Review of the Published Implementation Attempts

  2016cited by this paper
• Epidemiological and virological characteristics of influenza B: results of the Global Influenza B Study

  2015cited by this paper
• Molecular mechanisms enhancing the proteome of influenza A viruses: an overview of recently discovered proteins.

  2014cited by this paper
• Genomewide Analysis of Reassortment and Evolution of Human Influenza A(H3N2) Viruses Circulating between 1968 and 2011

  2013cited by this paper
• Molecular Epidemiology of Influenza A(H1N1)pdm09 Viruses from Pakistan in 2009–2010

  2012cited by this paper
• Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

  2012cited by this paper
• Genetic Characterization of Human Influenza Viruses in the Pandemic (2009–2010) and Post-Pandemic (2010–2011) Periods in Japan

  2012cited by this paper
• Update: infections with a swine-origin influenza A (H1N1) virus--United States and other countries, April 28, 2009.

  2009cited by this paper
• Single-Reaction Genomic Amplification Accelerates Sequencing and Vaccine Production for Classical and Swine Origin Human Influenza A Viruses

  2009cited by this paper
• The 2009 H1N1 influenza outbreak in its historical context.

  2009cited by this paper
• Influenza--WHO cares.

  2002cited by this paper

• Genomic surveillance of Influenza, SARS-CoV-2, and RSV in patients from Islamabad and Rawalpindi, Pakistan: a 2023-24 perspective

  2026cites this paper
• Analysis of Epidemiological and Evolutionary Characteristics of Seasonal Influenza Viruses in Shenzhen City from 2018 to 2024

  2025cites this paper
• Global trends in the application of nanopore sequencing technology in the detection of infectious disease pathogens: a bibliometric analysis from 2014 to 2024

  2025cites this paper
• Tracking Respiratory Viruses in Pakistan (2022–2025): Genomic and Epidemiologic Insights from Sentinel Surveillance of Influenza, SARS-CoV-2, and RSV

  2025cites this paper
• Expansion of Laboratory Capacity in the Eastern Mediterranean Region During the COVID‐19 Pandemic: Lessons Learned and Future Strategies for Sustainability

  2024cites this paper
• Evolutionary analysis of Hemagglutinin and neuraminidase gene variation in H1N1 swine influenza virus from vaccine intervention in China

  2024cites this paper
• Improving Seasonal Influenza Forecasting Using Time Series Machine Learning Techniques

  2024cites this paper