Effects of Light and Dark Conditions on the Transcriptome of Aging Cultures of Candidatus Puniceispirillum marinum IMCC1322

No abstract is available for this paper.

• Publication year

  2024

• Venue

  Journal of Microbiology

• Publication date

  2024-04-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s12275-024-00125-0PMID 38662311
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Bacterial Pathogen Infection Triggers Magic Spot Nucleotide Signaling in Arabidopsis thaliana Chloroplasts through Specific RelA/SpoT Homologues

  2023cited by this paper
• relA and spoT Gene Expression is Modulated in Salmonella Grown Under Static Magnetic Field

  2021cited by this paper
• Senescence in Bacteria and Its Underlying Mechanisms

  2021cited by this paper
• Regulatory Themes and Variations by the Stress-Signaling Nucleotide Alarmones (p)ppGpp in Bacteria.

  2021cited by this paper
• The Universally Conserved ATPase YchF Regulates Translation of Leaderless mRNA in Response to Stress Conditions

  2021cited by this paper
• (p)ppGpp: Magic Modulators of Bacterial Physiology and Metabolism

  2020influential reference
• Cell cycle control and environmental response by second messengers in Caulobacter crescentus

  2020cited by this paper
• Tracking the homeostasis of second messenger cyclic-di-GMP in bacteria

  2020cited by this paper
• ppGpp is a bacterial cell size regulator

  2020cited by this paper
• Host-hijacking and planktonic piracy: how phages command the microbial high seas

  2019cited by this paper
• Isolation, cultivation, and genome analysis of proteorhodopsin-containing SAR116-clade strain Candidatus Puniceispirillum marinum IMCC1322

  2019influential reference
• Engineering a carotenoid-binding site in Dokdonia sp. PRO95 Na+-translocating rhodopsin by a single amino acid substitution

  2018cited by this paper
• Regulation of stringent factor by branched-chain amino acids

  2018cited by this paper
• UpSetR: an R package for the visualization of intersecting sets and their properties

  2017influential reference
• Structural and biochemical analysis of Escherichia coli ObgE, a central regulator of bacterial persistence

  2017cited by this paper
• The magic dance of the alarmones (p)ppGpp

  2016cited by this paper
• Cell cycle control in Alphaproteobacteria.

  2016cited by this paper
• Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria

  2015cited by this paper
• Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP, (p)ppGpp signaling in bacteria and implications in pathogenesis.

  2013cited by this paper
• Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans

  2013influential reference
• Diversity and functional analysis of proteorhodopsin in marine Flavobacteria.

  2012cited by this paper
• Improved production of biohydrogen in light-powered Escherichia coli by co-expression of proteorhodopsin and heterologous hydrogenase

  2012cited by this paper
• Function and Regulation of Vibrio campbellii Proteorhodopsin: Acquired Phototrophy in a Classical Organoheterotroph

  2012cited by this paper
• The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life

  2011cited by this paper
• Complete Genome Sequence of Strain IMCC9063, Belonging to SAR11 Subgroup 3, Isolated from the Arctic Ocean

  2011cited by this paper
• Genome Sequence of Strain IMCC2047, a Novel Marine Member of the Gammaproteobacteria

  2011cited by this paper
• Widespread Occurrence of Secondary Lipid Biosynthesis Potential in Microbial Lineages

  2011cited by this paper
• Genome Sequence of Strain IMCC3088, a Proteorhodopsin-Containing Marine Bacterium Belonging to the OM60/NOR5 Clade

  2011cited by this paper
• Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium

  2011cited by this paper
• Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

  2011cited by this paper
• Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

  2011cited by this paper
• Constitutive Expression of the Proteorhodopsin Gene by a Flavobacterium Strain Representative of the Proteorhodopsin-Producing Microbial Community in the North Sea

  2010cited by this paper
• Genome Sequence of the Oligotrophic Marine Gammaproteobacterium HTCC2143, Isolated from the Oregon Coast

  2010influential reference
• Enhancement of Survival and Electricity Production in an Engineered Bacterium by Light-Driven Proton Pumping

  2010cited by this paper
• Fast and accurate long-read alignment with Burrows–Wheeler transform

  2010cited by this paper
• DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

  2010cited by this paper
• Complete Genome Sequence of “Candidatus Puniceispirillum marinum” IMCC1322, a Representative of the SAR116 Clade in the Alphaproteobacteria

  2010influential reference
• Bacterial and Archaeal Community Structure and its Patterns

  2008cited by this paper
• Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems

  2008cited by this paper
• Crystal Structure of Escherichia coli MazG, the Regulator of Nutritional Stress Response*

  2008cited by this paper
• Proteorhodopsins: an array of physiological roles?

  2008cited by this paper
• Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site

  2007cited by this paper
• Light stimulates growth of proteorhodopsin-containing marine Flavobacteria

  2007influential reference
• Light-powering Escherichia coli with proteorhodopsin

  2007cited by this paper
• A theoretical study on the amount of ATP required for synthesis of microbial cell material

  2007cited by this paper
• The SAR92 Clade: an Abundant Coastal Clade of Culturable Marine Bacteria Possessing Proteorhodopsin

  2007cited by this paper
• Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host

  2007cited by this paper
• Picturing the genetic code

  2007influential reference
• Role of murF in Cell Wall Biosynthesis: Isolation and Characterization of a murF Conditional Mutant of Staphylococcus aureus

  2006cited by this paper
• Proteorhodopsin in the ubiquitous marine bacterium SAR11

  2005cited by this paper
• New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins

  2005cited by this paper
• Impact of light on marine bacterioplankton community structure

  2005cited by this paper
• Different SAR86 subgroups harbour divergent proteorhodopsins.

  2004cited by this paper
• Stationary-phase physiology.

  2003cited by this paper
• Isoleucine starvation caused by sulfometuron methyl in Salmonella typhimurium measured by translational frameshifting.

  2002cited by this paper
• High-Throughput Methods for Culturing Microorganisms in Very-Low-Nutrient Media Yield Diverse New Marine Isolates

  2002cited by this paper
• Microbiological oceanography: Hidden in a sea of microbes

  2002cited by this paper
• The KEGG databases at GenomeNet

  2002influential reference
• Molecular Cloning: A Laboratory Manual

  2001cited by this paper
• Proteorhodopsin phototrophy in the ocean

  2001cited by this paper
• Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor

  2000cited by this paper
• Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

  2000cited by this paper
• PAS Domains: Internal Sensors of Oxygen, Redox Potential, and Light

  1999cited by this paper
• Substitution of chloroform by bromo-chloropropane in the single-step method of RNA isolation.

  1995cited by this paper
• Energetics of bacterial growth: balance of anabolic and catabolic reactions

  1995cited by this paper
• Energetics of bacterial growth: balance of anabolic and catabolic reactions.

  1995cited by this paper
• 3-Hydroxydecanoyl-[acyl-carrier-protein] dehydratase

  1990influential reference

• Culture-supported ecophysiology of the SAR116 clade demonstrates metabolic and spatial niche partitioning

  2025cites this paper
• Effect of Light Regime on Candidatus Puniceispirillum marinum IMCC1322 in Nutrient-Replete Conditions

  2024cites this paper