Evaluation of soil fungal communities using the ITS2 sublocus and 18S gene primers under different amplification methods

No abstract is available for this paper.

• Publication year

  2025

• Venue

  Fungal ecology

• Publication date

  Unknown publication date

• Fields of study

  Not labeled

• Identifiers
  DOI 10.1016/j.funeco.2025.101425
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Uncovering Diversity within the Glomeromycota: Novel Clades, Family Distributions, and Land Use Sensitivity

  2025cited by this paper
• An updated LSU database and pipeline for environmental DNA identification of arbuscular mycorrhizal fungi

  2024cited by this paper
• A metabarcoding protocol targeting two DNA regions to analyze root‐associated fungal communities in ferns and lycophytes

  2023cited by this paper
• The Function of Arbuscular Mycorrhizal Fungi Associated with Drought Stress Resistance in Native Plants of Arid Desert Ecosystems: A Review

  2023cited by this paper
• Disentangling the Belowground Web of Biotic Interactions in Temperate Coastal Grasslands: From Fundamental Knowledge to Novel Applications

  2023cited by this paper
• Characterization of the arbuscular mycorrhizal fungal community associated with rosewood in threatened Miombo forests

  2023cited by this paper
• Identifying structure change of vegetation under long-term disturbance in the Shendong mining area

  2023cited by this paper
• Assessment of the potential of Vachellia seyal and Prosopis chilensis for the reclamation of saline soil lands in the peanut basin production of Senegal

  2022cited by this paper
• MinION Sequencing of Yeast Mock Communities To Assess the Effect of Databases and ITS-LSU Markers on the Reliability of Metabarcoding Analysis

  2022cited by this paper
• Development of a nested PCR assay for specific detection of Metschnikowia bicuspidata infecting Eriocheir sinensis

  2022cited by this paper
• Phylotype diversity within soil fungal functional groups drives ecosystem stability

  2022cited by this paper
• Environmental identification of arbuscular mycorrhizal fungi using the LSU rDNA gene region: an expanded database and improved pipeline

  2022cited by this paper
• Best practices in metabarcoding of fungi: From experimental design to results

  2021cited by this paper
• 16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya

  2021cited by this paper
• Recent Advances in Molecular Diagnostics of Fungal Plant Pathogens: A Mini Review

  2021cited by this paper
• OUP accepted manuscript

  2021cited by this paper
• A critical perspective on interpreting amplicon sequencing data in soil ecological research

  2021cited by this paper
• Tracking, targeting, and conserving soil biodiversity

  2021cited by this paper
• DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions

  2021cited by this paper
• Utility of LSU for environmental sequencing of arbuscular mycorrhizal fungi: a new reference database and pipeline.

  2020cited by this paper
• New MiSeq based strategy exposed plant-preferential arbuscular mycorrhizal fungal communities in arid soils of Mexico

  2020cited by this paper
• Evaluation of primer pairs for studying arbuscular mycorrhizal fungal community compositions using a MiSeq platform

  2020cited by this paper
• Arbuscular mycorrhizal fungal community differentiation along a post-coal mining reclamation chronosequence in South Africa: A potential indicator of ecosystem recovery

  2020cited by this paper
• PCR inhibition in qPCR, dPCR and MPS—mechanisms and solutions

  2020cited by this paper
• RESCRIPt: Reproducible sequence taxonomy reference database management

  2020cited by this paper
• Hands-On Ecological Restoration as a Nature-Based Health Intervention: Reciprocal Restoration for People and Ecosystems

  2020cited by this paper
• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  2019cited by this paper
• Assessment of the Diversity of Fungal Community Composition Associated With Vachellia pachyceras and Its Rhizosphere Soil From Kuwait Desert

  2019cited by this paper
• DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies

  2019cited by this paper
• Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

  2019cited by this paper
• Scrutinizing key steps for reliable metabarcoding of environmental samples

  2018cited by this paper
• High-level classification of the Fungi and a tool for evolutionary ecological analyses

  2018cited by this paper
• Evolutionary history of mycorrhizal symbioses and global host plant diversity.

  2018cited by this paper
• More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers?

  2018cited by this paper
• Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing

  2018cited by this paper
• Mycobiome diversity: high-throughput sequencing and identification of fungi

  2018cited by this paper
• Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities

  2018cited by this paper
• A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

  2018cited by this paper
• The influence of environmental factors on communities of arbuscular mycorrhizal fungi associated with Chenopodium ambrosioides revealed by MiSeq sequencing investigation

  2017cited by this paper
• A re-evaluation of dilution for eliminating PCR inhibition in soil DNA samples

  2017cited by this paper
• ITS fungal barcoding primers versus 18S AMF‐specific primers reveal similar AMF‐based diversity patterns in roots and soils of three mountain vineyards

  2017cited by this paper
• DADA2: High resolution sample inference from Illumina amplicon data

  2016cited by this paper
• Community assembly and coexistence in communities of arbuscular mycorrhizal fungi

  2016cited by this paper
• Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

  2015cited by this paper
• Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

  2015cited by this paper
• Nested PCR Biases in Interpreting Microbial Community Structure in 16S rRNA Gene Sequence Datasets

  2015cited by this paper
• Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis

  2014cited by this paper
• Global diversity and geography of soil fungi

  2014cited by this paper
• Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?

  2014cited by this paper
• Evaluation of six primer pairs targeting the nuclear rRNA operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing.

  2014cited by this paper
• DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences1

  2014cited by this paper
• Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies

  2014cited by this paper
• Enhancing PCR amplification of DNA from recalcitrant plant specimens using a trehalose-based additive

  2013cited by this paper
• Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi

  2013cited by this paper
• Unravelling Soil Fungal Communities from Different Mediterranean Land-Use Backgrounds

  2012cited by this paper
• Surprising spectra of root-associated fungi in submerged aquatic plants.

  2012cited by this paper
• The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

  2012cited by this paper
• Finding Single Copy Genes Out of Sequenced Genomes for Multilocus Phylogenetics in Non-Model Fungi

  2011cited by this paper
• ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

  2010cited by this paper
• The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota).

  2010cited by this paper
• Idiosyncrasy and overdominance in the structure of natural communities of arbuscular mycorrhizal fungi: is there a role for stochastic processes?

  2010cited by this paper
• Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach.

  2009cited by this paper
• Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

  2005cited by this paper
• Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola

  1990cited by this paper
• Distributed under Creative Commons Cc-by 4.0 Vsearch: a Versatile Open Source Tool for Metagenomics

  year unknowncited by this paper

• Arbuscular mycorrhizal fungal communities and relationship with edaphic factors in the rhizospheric soil of Fabaceae in semi-arid South Africa

  2025cites this paper