Reproducibility and Accuracy of Nanopore-Based Methylome Profiling of Streptococcus dysgalactiae subspecies equisimilis Strains from Cancer Patients

No abstract is available for this paper.

• Publication year

  2025

• Venue

  bioRxiv

• Publication date

  2025-06-06

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1101/2025.06.04.657942
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Comprehensive benchmarking of tools for nanopore-based detection of DNA methylation

  2026cited by this paper
• Comprehensive comparison of the third-generation sequencing tools for bacterial 6mA profiling

  2025cited by this paper
• High intra-laboratory reproducibility of nanopore sequencing in bacterial species underscores advances in its accuracy

  2025cited by this paper
• Decoding bacterial methylomes in four public health-relevant microbial species: nanopore sequencing enables reproducible analysis of DNA modifications

  2025influential reference
• DNA methylome regulates virulence and metabolism in Pseudomonas syringae

  2024cited by this paper
• Rapid whole genome characterization of antimicrobial-resistant pathogens using long-read sequencing to identify potential healthcare transmission

  2024cited by this paper
• A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens

  2024cited by this paper
• Dnaapler: A tool to reorient circular microbial genomes

  2024cited by this paper
• Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp

  2023cited by this paper
• MicrobeMod: A computational toolkit for identifying prokaryotic methylation and restriction-modification with nanopore sequencing

  2023cited by this paper
• Rapid and sensitive detection of genome contamination at scale with FCS-GX

  2023influential reference
• WebQUAST: online evaluation of genome assemblies

  2023influential reference
• Bacterial DNA methyltransferase: A key to the epigenetic world with lessons learned from proteobacteria

  2023cited by this paper
• Beyond Restriction Modification: Epigenomic Roles of DNA Methylation in Prokaryotes.

  2021cited by this paper
• Polypolish: Short-read polishing of long-read bacterial genome assemblies

  2021cited by this paper
• BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

  2021influential reference
• STREME: Accurate and versatile sequence motif discovery

  2020cited by this paper
• Twelve years of SAMtools and BCFtools

  2020cited by this paper
• DNA methylation from a Type I restriction modification system influences gene expression and virulence in Streptococcus pyogenes

  2019cited by this paper
• N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori

  2018cited by this paper
• Assembly of long, error-prone reads using repeat graphs

  2018cited by this paper
• cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly

  2018cited by this paper
• Phase-variable methylation and epigenetic regulation by type I restriction-modification systems.

  2017cited by this paper
• Minimap2: pairwise alignment for nucleotide sequences

  2017cited by this paper
• The Epigenomic Landscape of Prokaryotes

  2016cited by this paper
• Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

  2016cited by this paper
• The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

  2016influential reference
• A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae

  2015cited by this paper
• Diverse Functions of Restriction-Modification Systems in Addition to Cellular Defense

  2013cited by this paper
• Invasive infection caused by Streptococcus dysgalactiae subsp. equisimilis: characteristics of strains and clinical features

  2011cited by this paper
• The RAST Server: Rapid Annotations using Subsystems Technology

  2008cited by this paper
• A DNA Methyltransferase Can Protect the Genome from Postdisturbance Attack by a Restriction-Modification Gene Complex

  2002cited by this paper
• Roles of DNA Adenine Methylation in Regulating Bacterial Gene Expression and Virulence

  2001cited by this paper
• An essential role for DNA adenine methylation in bacterial virulence.

  1999cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification

  year unknowncited by this paper

• No citing papers are available for this paper.