Design and testing of 'genome-proxy' microarrays to profile marine microbial communities.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Environmental Microbiology

• Publication date

  2008-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/J.1462-2920.2007.01471.XPMID 18028413
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean Sea in summer.

  2007cited by this paper
• The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

  2007cited by this paper
• Urban aerosols harbor diverse and dynamic bacterial populations

  2007cited by this paper
• GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes

  2007cited by this paper
• High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment

  2007cited by this paper
• Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host

  2007cited by this paper
• Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla.

  2007cited by this paper
• Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior

  2006cited by this paper
• The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

  2006cited by this paper
• Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

  2006cited by this paper
• Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data

  2006cited by this paper
• Oceanographic Basis of the Global Surface Distribution of Prochlorococcus Ecotypes

  2006cited by this paper
• Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients

  2006cited by this paper
• Microarray oligonucleotide probes.

  2006cited by this paper
• Comparative Genomics of DNA Fragments from Six Antarctic Marine Planktonic Bacteria

  2006cited by this paper
• Prochlorococcus Ecotype Abundances in the North Atlantic Ocean As Revealed by an Improved Quantitative PCR Method

  2006cited by this paper
• Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

  2006cited by this paper
• Microarray Applications in Microbial Ecology Research

  2006cited by this paper
• Rapid quantitative profiling of complex microbial populations

  2006cited by this paper
• Ecotypes of Planktonic Actinobacteria with Identical 16S rRNA Genes Adapted to Thermal Niches in Temperate, Subtropical, and Tropical Freshwater Habitats

  2005cited by this paper
• Genomic insights that advance the species definition for prokaryotes.

  2005cited by this paper
• 16S rRNA Gene-Based Oligonucleotide Microarray for Environmental Monitoring of the Betaproteobacterial Order “Rhodocyclales”

  2005cited by this paper
• Ecological Significance of Microdiversity: Identical 16S rRNA Gene Sequences Can Be Found in Bacteria with Highly Divergent Genomes and Ecophysiologies

  2004cited by this paper
• Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples.

  2004cited by this paper
• Phylogenetic Screening of Ribosomal RNA Gene-Containing Clones in Bacterial Artificial Chromosome (BAC) Libraries from Different Depths in Monterey Bay

  2004cited by this paper
• Different SAR86 subgroups harbour divergent proteorhodopsins.

  2004cited by this paper
• Detection of Genes Involved in Biodegradation and Biotransformation in Microbial Communities by Using 50-Mer Oligonucleotide Microarrays

  2004cited by this paper
• Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications.

  2004cited by this paper
• Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers.

  2004cited by this paper
• Proteorhodopsin genes are distributed among divergent marine bacterial taxa

  2003cited by this paper
• Development and validation of a diagnostic microbial microarray for methanotrophs.

  2003cited by this paper
• Metagenomic Profiling: Microarray Analysis of an Environmental Genomic Library

  2003cited by this paper
• Oligonucleotide Microarray for the Study of Functional Gene Diversity in the Nitrogen Cycle in the Environment

  2003cited by this paper
• Analysis of natural populations of Prochlorococcus spp. in the northern Red Sea using phycoerythrin gene sequences.

  2003cited by this paper
• Analysis of environmental microbial communities by reverse sample genome probing.

  2003cited by this paper
• Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

  2003cited by this paper
• Viral Discovery and Sequence Recovery Using DNA Microarrays

  2003cited by this paper
• Microarrays for bacterial detection and microbial community analysis.

  2003cited by this paper
• Molecular diversity among marine picophytoplankton as revealed by psbA analyses.

  2003cited by this paper
• Utilization of different nitrogen sources by the marine cyanobacteria Prochlorococcus and Synechococcus

  2002cited by this paper
• Comparative Genomic Analysis of Archaeal Genotypic Variants in a Single Population and in Two Different Oceanic Provinces

  2002cited by this paper
• Resolution of Prochlorococcus and Synechococcus Ecotypes by Using 16S-23S Ribosomal DNA Internal Transcribed Spacer Sequences

  2002cited by this paper
• Parallel Characterization of Anaerobic Toluene- and Ethylbenzene-Degrading Microbial Consortia by PCR-Denaturing Gradient Gel Electrophoresis, RNA-DNA Membrane Hybridization, and DNA Microarray Technology

  2002cited by this paper
• Molecular ecology of the marine cyanobacterial genera Prochlorococcus and Synechococcus.

  2002cited by this paper
• Microarray-based detection and genotyping of viral pathogens

  2002cited by this paper
• Quantitative Detection of Microbial Genes by Using DNA Microarrays

  2002cited by this paper
• Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment

  2002cited by this paper
• Unsuspected diversity among marine aerobic anoxygenic phototrophs

  2002cited by this paper
• High-Density Microarray of Small-Subunit Ribosomal DNA Probes

  2002cited by this paper
• Quantitative mapping of bacterioplankton populations in seawater : field tests across an upwelling plume in Monterey Bay

  2001cited by this paper
• Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment

  2001cited by this paper
• Direct Detection of 16S rRNA in Soil Extracts by Using Oligonucleotide Microarrays

  2001cited by this paper
• Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage.

  2000cited by this paper
• The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences.

  2000cited by this paper
• Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

  2000cited by this paper
• Prochlorococcus, a Marine Photosynthetic Prokaryote of Global Significance

  1999cited by this paper
• Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

  1998cited by this paper
• Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon

  1996cited by this paper
• Ecological Diversity and Its Measurement

  1988cited by this paper

• Advances in sampling strategies and analysis of phytoplankton

  2019cites this paper
• Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column

  2017cites this paper
• RNA Preservation Agents and Nucleic Acid Extraction Method Bias Perceived Bacterial Community Composition

  2015cites this paper
• Techniques for quantifying phytoplankton biodiversity.

  2015cites this paper
• Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics

  2015cites this paper
• Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter

  2015cites this paper
• Molecular Methods in Geomicrobiology

  2015cites this paper
• Crenarchaeal heterotrophy in salt marsh sediments

  2014cites this paper
• A new class of marine Euryarchaeota group II from the mediterranean deep chlorophyll maximum

  2014cites this paper
• Crenarchaeal heterotrophy in salt marsh sediments

  2014cites this paper
• Chapter 1 - Applications of Functional Gene Microarrays for Profiling Microbial Communities

  2014cites this paper
• Phylogenetic Microarrays

  2013cites this paper
• Microarray-Based Amplification Product Detection and Identification

  2013cites this paper
• Combining "omics" strategies to analyze the biotechnological potential of complex microbial environments.

  2013cites this paper
• Current molecular biologic techniques for characterizing environmental microbial community

  2012cites this paper
• Applications of functional gene microarrays for profiling microbial communities.

  2012cites this paper
• “Omics”-Enabled Microbial Sensors on Ocean Platforms

  2012cites this paper
• Nachweis von Legionella pneumophila in Luft und Wasser mittels Antikörper-Mikroarrays

  2012cites this paper
• New Developments and Applications of Microarrays for Microbial Community Analysis in Natural and Impacted Ecosystems

  2011cites this paper
• Analysis of methanotroph community composition using a pmoA-based microbial diagnostic microarray

  2011cites this paper
• The Hydrogenase Chip: a tiling oligonucleotide DNA microarray technique for characterizing hydrogen-producing and -consuming microbes in microbial communities

  2011cites this paper
• Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

  2011cites this paper
• Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray.

  2011cites this paper
• Monitoring Microbial Activity with GeoChip

  2011cites this paper
• Evaluating the Performance of Oligonucleotide Microarrays for Bacterial Strains with Increasing Genetic Divergence from the Reference Strain

  2010cites this paper
• Utility of Molecular Tools in Monitoring Large Scale Composting

  2010cites this paper
• Manual of Aquatic Viral Ecology

  2010cites this paper
• Unlocking Environmental DNA Derived Gene Clusters Using a Metagenomics Approach

  2010cites this paper
• Evaluation of substrate performance for a microbial diagnostic microarray using a four parameter ranking.

  2009cites this paper
• What are "ecogenomic sensors?" A review and thoughts for the future

  2009cites this paper
• Microbial diversity in the municipal composting process and development of detection methods

  2009cites this paper
• Construction of microarrays and their application to virus analysis

  2009cites this paper
• Oceanography THE OFFICIAL MAGAzINE OF THE OCEANOGRAPHY SOCIETY

  2009cites this paper
• Novel blue light-sensitive proteins from a metagenomic approach.

  2009cites this paper
• Molecular eco-systems biology: towards an understanding of community function

  2008cites this paper
• Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

  2008influential citation
• Molecular biology techniques and applications for ocean sensing

  2008cites this paper
• Universal ligation-detection-reaction microarray applied for compost microbes

  2008cites this paper
• Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre.

  2008cites this paper
• Microbial Source Tracking

  2006cites this paper