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Design and synthesis of Betti base derivatives as EGFR inhibitors.

Xiaotian Xu,Huan He,Qian Guo,Shanhe Wan,Zhonghuang Li,Jiajie Zhang,Xiaoyun Wu

Published 2025 in Bioorganic chemistry (Print)

ABSTRACT

EGFR serves as a critical oncogenic driver in NSCLC pathogenesis. While multiple generations of EGFR TKIs have been clinically approved, their efficacy is frequently limited by rapid drug resistance. Several EGFR allosteric inhibitors targeting a site adjacent to the ATP-binding site have been reported. The allosteric inhibitors EAI001 and EAI045 are a new type of EGFR inhibitors that bind to EGFR away from the ATP-binding site and not relying on Cys 797. In our previous work, compound ZINC49691377 (1a) was identified using the structure-based high throughput virtual screening as a novel potent anticancer agent. In the current study, a focused library of Betti base derivatives were designed based on ZINC49691377 (1a) through substituent transformation and bioisosteric replacement. Compound 2b showed the highest antiproliferative activity against H1975 cells (IC50 = 0.40 ± 0.01 μM), and significant activity against Ba/F3-EGFRL858R/T790M/C797S cells (IC50 = 2.36 ± 0.33 μM). Notably, 2b treatment induced G0/G1 phase cell cycle arrest in H1975 cells while triggering significant apoptosis in both H1975 and Ba/F3-EGFRL858R/T790M/C797S cell lines. Molecular docking and dynamics simulation confirmed stable binding of 2b within the allosteric pocket of EGFR. These findings demonstrated Betti base derivatives as a novel chemotype for the design of novel EGFR inhibitors.

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