Large-scale insights into the biosynthetic potential of the Bacillus cereus group

No abstract is available for this paper.

• Publication year

  2025

• Venue

  bioRxiv

• Publication date

  2025-10-16

• Fields of study

  Biology, Chemistry

• Identifiers
  DOI 10.1101/2025.10.16.682773
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Scalable secondary metabolite production in Streptomyces using a plug-and-play system.

  2025cited by this paper
• Fast, flexible gene cluster family delineation with IGUA

  2025influential reference
• LoVis4u: a locus visualization tool for comparative genomics and coverage profiles

  2025influential reference
• Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

  2025cited by this paper
• Bacillus cereus sensu lato antimicrobial arsenal: An overview.

  2024cited by this paper
• High-Throughput Mining of Novel Compounds from Known Microbes: A Boost to Natural Product Screening

  2024cited by this paper
• Bacillamide D produced by Bacillus cereus from the mouse intestinal bacterial collection (miBC) is a potent cytotoxin in vitro

  2024cited by this paper
• MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

  2024influential reference
• Plant-Associated Representatives of the Bacillus cereus Group Are a Rich Source of Antimicrobial Compounds

  2023influential reference
• antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation

  2023cited by this paper
• Antibiotics from rare actinomycetes, beyond the genus Streptomyces.

  2023cited by this paper
• Artificial intelligence for natural product drug discovery

  2023influential reference
• phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)

  2023cited by this paper
• A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance

  2023influential reference
• Species-specificity of the secondary biosynthetic potential in Bacillus

  2023influential reference
• Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes

  2022cited by this paper
• Thurincin H Is a Nonhemolytic Bacteriocin of Bacillus thuringiensis with Potential for Applied Use

  2022cited by this paper
• Strategies to access biosynthetic novelty in bacterial genomes for drug discovery

  2022cited by this paper
• Dictionary learning for integrative, multimodal and scalable single-cell analysis

  2022influential reference
• MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

  2022cited by this paper
• Mining and unearthing hidden biosynthetic potential

  2021cited by this paper
• Accurate de novo identification of biosynthetic gene clusters with GECCO

  2021influential reference
• Single-cell chromatin state analysis with Signac

  2021influential reference
• From the soil to the clinic: the impact of microbial secondary metabolites on antibiotic tolerance and resistance

  2021cited by this paper
• GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

  2021cited by this paper
• Biosynthetic gene cluster profiling predicts the positive association between antagonism and phylogeny in Bacillus

  2021influential reference
• antiSMASH 6.0: improving cluster detection and comparison capabilities

  2021influential reference
• Ggtree: a serialized data object for visualization of phylogenetic tree and annotation data

  2020cited by this paper
• Pfam: The protein families database in 2021

  2020cited by this paper
• Producing polished prokaryotic pangenomes with the Panaroo pipeline

  2020influential reference
• Polarization of microbial communities between competitive and cooperative metabolism

  2020influential reference
• No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus Group With Historical Typing Methods

  2020influential reference
• IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

  2019influential reference
• The Bacillus cereus Group: Bacillus Species with Pathogenic Potential

  2019cited by this paper
• A deep learning genome-mining strategy for biosynthetic gene cluster prediction

  2019cited by this paper
• Proposal of a Taxonomic Nomenclature for the Bacillus cereus Group Which Reconciles Genomic Definitions of Bacterial Species with Clinical and Industrial Phenotypes

  2019cited by this paper
• A computational framework to explore large-scale biosynthetic diversity

  2019cited by this paper
• Welcome to the Tidyverse

  2019influential reference
• ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

  2018cited by this paper
• Accessing Bioactive Natural Products from the Human Microbiome.

  2018cited by this paper
• BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

  2018cited by this paper
• UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction

  2018influential reference
• The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria.

  2017cited by this paper
• Database resources of the National Center for Biotechnology Information

  2017cited by this paper
• UFBoot2: Improving the Ultrafast Bootstrap Approximation

  2017cited by this paper
• Large-Scale Bioinformatics Analysis of Bacillus Genomes Uncovers Conserved Roles of Natural Products in Bacterial Physiology

  2017influential reference
• Thusin, a Novel Two-Component Lantibiotic with Potent Antimicrobial Activity against Several Gram-Positive Pathogens

  2016cited by this paper
• SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

  2016influential reference
• The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

  2016cited by this paper
• Food–bacteria interplay: pathometabolism of emetic Bacillus cereus

  2015cited by this paper
• Computational approaches to natural product discovery.

  2015cited by this paper
• Pseudomycoicidin, a Class II Lantibiotic from Bacillus pseudomycoides

  2015cited by this paper
• Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.

  2014cited by this paper
• Prokka: rapid prokaryotic genome annotation

  2014influential reference
• Bovicin HJ50-Like Lantibiotics, a Novel Subgroup of Lantibiotics Featured by an Indispensable Disulfide Bridge

  2014cited by this paper
• A Roadmap for Natural Product Discovery Based on Large-Scale Genomics and Metabolomics

  2014cited by this paper
• Diversity of Secondary Metabolites from Marine Bacillus Species: Chemistry and Biological Activity

  2013cited by this paper
• The influence of rate heterogeneity among sites on the time dependence of molecular rates.

  2012cited by this paper
• VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

  2011cited by this paper
• ggplot2: Elegant Graphics for Data Analysis

  2010influential reference
• Thuricin CD, a posttranslationally modified bacteriocin with a narrow spectrum of activity against Clostridium difficile

  2010cited by this paper
• Ability of Bacillus cereus Group Strains To Cause Food Poisoning Varies According to Phylogenetic Affiliation (Groups I to VII) Rather than Species Affiliation

  2010cited by this paper
• BLAST+: architecture and applications

  2009influential reference
• From soil to gut: Bacillus cereus and its food poisoning toxins.

  2008cited by this paper
• Ecological diversification in the Bacillus cereus Group.

  2008cited by this paper
• Characterization of the Complete Zwittermicin A Biosynthesis Gene Cluster from Bacillus cereus

  2008cited by this paper
• Cereulide synthetase gene cluster from emetic Bacillus cereus: Structure and location on a mega virulence plasmid related to Bacillus anthracis toxin plasmid pXO1

  2006cited by this paper
• Genomics of the Bacillus cereus group of organisms.

  2005cited by this paper
• Bacillus anthracis requires siderophore biosynthesis for growth in macrophages and mouse virulence

  2004cited by this paper
• A space-time process model for the evolution of DNA sequences.

  1995cited by this paper
• Some probabilistic and statistical problems in the analysis of DNA sequences

  1986cited by this paper
• The total structure of cerexin A (studies on antibiotics from the genus Bacillus. XVI.

  1976cited by this paper
• Chemical characterization of new antibiotics, cerexins A and B. (Studies on antibiotics from the genus Bacillus. II)

  1975cited by this paper

• No citing papers are available for this paper.