Multiple intermolecular interaction modes of positively charged residues with adenine in ATP-binding proteins.

No abstract is available for this paper.

• Publication year

  2003

• Venue

  Journal of the American Chemical Society

• Publication date

  2003-10-30

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1021/JA036096PPMID 14624536
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A consensus‐binding structure for adenine at the atomic level permits searching for the ligand site in a wide spectrum of adenine‐containing complexes

  2003cited by this paper
• Probing the Energetic and Structural Role of Amino Acid/Nucleobase Cation-π Interactions in Protein-Ligand Complexes* 210

  2002cited by this paper
• A quantum chemistry study of binding carotenoids in the bacterial light-harvesting complexes.

  2002cited by this paper
• ATPases as drug targets: learning from their structure

  2002cited by this paper
• Classification of proteins based on the properties of the ligand‐binding site: The case of adenine‐binding proteins

  2002cited by this paper
• Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.

  2001cited by this paper
• Adenine recognition: A motif present in ATP‐, CoA‐, NAD‐, NADP‐, and FAD‐dependent proteins

  2001cited by this paper
• When fold is not important: A common structural framework for adenine and AMP binding in 12 unrelated protein families

  2000cited by this paper
• Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase

  1998cited by this paper
• Protein recognition of adenylate: an example of a fuzzy recognition template.

  1996cited by this paper
• Cation-π Interactions in Chemistry and Biology: A New View of Benzene, Phe, Tyr, and Trp

  1996cited by this paper
• SCOP: a structural classification of proteins database for the investigation of sequences and structures.

  1995cited by this paper

• Molecular Recognition of SARS-CoV-2 Mpro Inhibitors: Insights from Cheminformatics and Quantum Chemistry

  2025cites this paper
• SARS-CoV-2 Is an Electricity-Driven Virus.

  2025cites this paper
• Selection of biofilm-inhibiting ssDNA aptamers against antibiotic-resistant Edwardsiella tarda by inhibition-SELEX and interaction with their binding proteins.

  2025cites this paper
• Molecular Determinants for Guanine Binding in GTP-Binding Proteins: A Data Mining and Quantum Chemical Study

  2024cites this paper
• Bioisoteres for carboxylic acids: From ionized isosteres to novel unionized replacements.

  2024cites this paper
• A systematic study on immiscible binary systems undergoing thermal/photo reversible chemical reactions.

  2022cites this paper
• Mechanistic Insight on General Protein-Binding Ability of ATP and the Impacts of Arginine Residues.

  2022cites this paper
• The accelerated evolution of human cytochrome c oxidase - Selection for reduced rate and proton pumping efficiency?

  2022cites this paper
• Molecular Recognition of FDA-Approved Small Molecule Protein Kinase Drugs in Protein Kinases

  2022cites this paper
• Structural Biology for the Molecular Insight between Aptamers and Target Proteins

  2021cites this paper
• Calix[n]triazolium based turn-on fluorescent sensing ensemble for selective adenosine monophosphate (AMP) detection.

  2021cites this paper
• Aromatic Rings as Molecular Determinants for the Molecular Recognition of Protein Kinase Inhibitors

  2021cites this paper
• Polydopamine-assisted one-step modification of nanofiber surfaces with adenosine to tune the osteogenic differentiation of mesenchymal stem cells and the maturation of osteoclasts.

  2020cites this paper
• Impact of sunflower (Helianthus annuus L.) plastidial lipoyl synthases genes expression in glycerolipids composition of transgenic Arabidopsis plants

  2020cites this paper
• Interplay Between Short-range Attraction and Long-range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes

  2019cites this paper
• TRAF6 Plays a Proviral Role in Tick-Borne Flavivirus Infection through Interaction with the NS3 Protease

  2019cites this paper
• Quantum Chemical Study of Molecular Recognition between Etravirine/Rilpivirine and the HIV-1 Reverse Transcriptase

  2017cites this paper
• Design of a New Concentration Series for the Orthogonal Sample Design Approach and Estimation of the Number of Reactions in Chemical Systems

  2015cites this paper
• Structural basis of cofactor-mediated stabilization and substrate recognition of the α-tubulin acetyltransferase αTAT1.

  2015cites this paper
• Evolution of plant δ1-pyrroline-5-carboxylate reductases from phylogenetic and structural perspectives

  2015cites this paper
• Performances of DFT methods implemented in G09 for simulations of the dispersion-dominated CH-π in ligand–protein complex: A case study with glycerol-GDH

  2015cites this paper
• Structures of lipoyl synthase reveal a compact active site for controlling sequential sulfur insertion reactions.

  2014cites this paper
• Cation-π interaction: its role and relevance in chemistry, biology, and material science.

  2013cites this paper
• Divergent DNA-Binding Specificities of a Group of ETHYLENE RESPONSE FACTOR Transcription Factors Involved in Plant Defense1[C][W]

  2013cites this paper
• Exploring the code for specific binding by the RNA recognition motif domain

  2013cites this paper
• Running head: DNA-binding specificities of ERF transcription factors Corresponding author:

  2013cites this paper
• Quantum chemical study of molecular recognition in protein-ligand complexes

  2013cites this paper
• A importância nutricional da glutamina na fisiologia de matrizes suínas lactantes

  2013cites this paper
• Theoretical Study of Intermolecular Interactions in Protein-Drug Binding and Protein Folding

  2012cites this paper
• Adenine recognition is a key checkpoint in the energy release mechanism of phage T4 DNA packaging motor.

  2012cites this paper
• The influence of changing the sequence of concentration series on the 2D asynchronous spectroscopy generated by the asynchronous orthogonal sample design (AOSD) approach

  2012cites this paper
• Mechanisms of chloride modulated activity in the C-domain of angiotensin-converting enzyme

  2012cites this paper
• Deciphering the Arginine-Binding Preferences at the Substrate-Binding Groove of Ser/Thr Kinases by Computational Surface Mapping

  2011cites this paper
• Probing Cardiac Calcium Regulation Using Fluorescence Spectroscopy

  2011cites this paper
• Alternative chiral thiols for preparation of chiral CdS quantum dots covered immediately by achiral thiols.

  2011cites this paper
• CH···π interactions do not contribute to hydrogen transfer catalysis by glycerol dehydratase.

  2011cites this paper
• ATP‐binding Motifs

  2010cites this paper
• The Investigation of Interaction Competition Between ATP and DIPP-Ala, Boc-Ala, or Ala by ESI-MS/MS and Theoretical Calculation

  2010cites this paper
• Theoretical studies of molecular recognition in protein-ligand and protein-protein complexes

  2010cites this paper
• QM/MM (ONIOM) study of glycerol binding and hydrogen abstraction by the coenzyme B12-independent dehydratase.

  2010cites this paper
• Downstream antibody purification using aqueous two‐phase extraction

  2010cites this paper
• Structural correlations of activity of Clostridium acetobutylicum ATCC 824 butyrate kinase isozymes

  2010cites this paper
• Quantum Mechanical Studies of Noncovalent DNA–Protein Interactions

  2010cites this paper
• A structural explanation for the antithrombotic activity of ARC1172, a DNA aptamer that binds von Willebrand factor domain A1.

  2009cites this paper
• Relevance of Arg457 for the nucleotide affinity of Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase.

  2008cites this paper
• 2-Position base-modified analogues of adenophostin A as high-affinity agonists of the D-myo-inositol trisphosphate receptor: in vitro evaluation and molecular modeling.

  2008cites this paper
• Probing phenylalanine/adenine pi-stacking interactions in protein complexes with explicitly correlated and CCSD(T) computations.

  2008cites this paper
• Studies on the Contribution of Phosphoryl Group to the Non-Covalent Interaction between ATP and α-Aminophosphonic Acids Derivatives by ESI-MS and Molecular Modeling

  2008cites this paper
• Isopropoxycarbonyl) phenylmethyl ammonium chloride

  2007cites this paper
• The Molecular Basis for Cyclopiazonic Acid Inhibition of the Sarcoplasmic Reticulum Calcium Pump*

  2007cites this paper
• Orthogonal Sample Design Scheme for Two-Dimensional Synchronous Spectroscopy and its Application in Probing Intermolecular Interactions

  2007cites this paper
• Molecular basis of the recognition process: hydrogen-bonding patterns in the guanine primary recognition site of ribonuclease T1.

  2006cites this paper
• Sequence-specific binding of single-stranded RNA: is there a code for recognition?

  2006cites this paper
• Molecular determinants for binding of ammonium ion in the ammonia transporter AmtB-A quantum chemical analysis.

  2006cites this paper
• Chapter 13 Targeting the Kinome with Computational Chemistry

  2005cites this paper
• A binding mechanism in protein-nucleotide interactions: implication for U1A RNA binding.

  2005cites this paper
• Structural and thermodynamic studies on cation-Pi interactions in lectin-ligand complexes: high-affinity galectin-3 inhibitors through fine-tuning of an arginine-arene interaction.

  2005cites this paper
• Adenophostin A and analogues modified at the adenine moiety: synthesis, conformational analysis and biological activity.

  2005cites this paper
• Molecular recognition in purinergic receptors. 1. A comprehensive computational study of the h-P2Y1-receptor.

  2004cites this paper
• Molecular determinants for ATP-binding in proteins: a data mining and quantum chemical analysis.

  2004cites this paper