Modulation of the Thermodynamic Signatures of an RNA Thermometer by Osmolytes and Salts.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Angewandte Chemie

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Physics, Chemistry

• Identifiers
  DOI 10.1002/anie.201611843PMID 28102930
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• RNA Hairpin Folding in the Crowded Cell

  2016cited by this paper
• Faltung einer RNA‐Haarnadel in der dicht gedrängten Zelle

  2016cited by this paper
• Probing volumetric properties of biomolecular systems by pressure perturbation calorimetry (PPC)--the effects of hydration, cosolvents and crowding.

  2015cited by this paper
• Pressure-A Gateway to Fundamental Insights into Protein Solvation, Dynamics, and Function.

  2015cited by this paper
• Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory

  2015cited by this paper
• Kinetic and thermodynamic origins of osmolyte-influenced nucleic acid folding.

  2015cited by this paper
• Microscopic insights into the protein-stabilizing effect of trimethylamine N-oxide (TMAO)

  2014cited by this paper
• Effects of molecular crowding on the structures, interactions, and functions of nucleic acids.

  2014cited by this paper
• Hydration changes accompanying helix-to-coil DNA transitions.

  2014cited by this paper
• Cosolvent effects on protein stability.

  2013cited by this paper
• Quantifying functional group interactions that determine urea effects on nucleic acid helix formation.

  2013cited by this paper
• Effect of Pressure on Thermal Stability of G-Quadruplex DNA and Double-Stranded DNA Structures

  2013cited by this paper
• Urea-induced denaturation of preQ1-riboswitch.

  2013cited by this paper
• Denaturation of RNA secondary and tertiary structure by urea: simple unfolded state models and free energy parameters account for measured m-values.

  2012cited by this paper
• The effect of hydrostatic pressure on the thermal stability of DNA hairpins.

  2011cited by this paper
• Equilibrium study of protein denaturation by urea.

  2010cited by this paper
• Structural characterization of naturally occurring RNA single mismatches

  2010cited by this paper
• Hydrogen Bonding Progressively Strengthens upon Transfer of the Protein Urea-Denatured State to Water and Protecting Osmolytes†

  2010cited by this paper
• The osmolyte TMAO stabilizes native RNA tertiary structures in the absence of Mg2+: evidence for a large barrier to folding from phosphate dehydration.

  2010cited by this paper
• Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution

  2010cited by this paper
• Counteraction of urea by trimethylamine N-oxide is due to direct interaction.

  2009cited by this paper
• Urea destabilizes RNA by forming stacking interactions and multiple hydrogen bonds with nucleic acid bases.

  2009cited by this paper
• Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria.

  2009cited by this paper
• Helix-coil transition of DNA monitored by pressure perturbation calorimetry.

  2009cited by this paper
• Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding

  2008cited by this paper
• Structural change in a B-DNA helix with hydrostatic pressure

  2008cited by this paper
• Effects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins.

  2008cited by this paper
• Human telomerase RNA pseudoknot and hairpin thermal stability with glycine betaine and urea: preferential interactions with RNA secondary and tertiary structures.

  2007cited by this paper
• Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions.

  2007cited by this paper
• Anatomy of energetic changes accompanying urea-induced protein denaturation

  2007cited by this paper
• Organic osmolytes as compatible, metabolic and counteracting cytoprotectants in high osmolarity and other stresses

  2005cited by this paper
• A guide to ions and RNA structure.

  2004cited by this paper
• Trimethylamine N-oxide stabilizes RNA tertiary structure and attenuates the denaturating effects of urea.

  2003cited by this paper
• The molecular mechanism of stabilization of proteins by TMAO and its ability to counteract the effects of urea.

  2002cited by this paper
• Structural Thermodynamics of Hydration

  2001cited by this paper
• On the stability of double stranded nucleic acids.

  2001cited by this paper
• The osmophobic effect: natural selection of a thermodynamic force in protein folding.

  2001cited by this paper
• Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding.

  1999cited by this paper
• High contents of trimethylamine oxide correlating with depth in deep-sea teleost fishes, skates, and decapod crustaceans.

  1999cited by this paper
• On volume changes accompanying conformational transitions of biopolymers.

  1998cited by this paper
• Hydration of RNA base pairs.

  1998cited by this paper
• Charge density-dependent strength of hydration and biological structure.

  1997cited by this paper
• The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches.

  1997cited by this paper
• The control of protein stability and association by weak interactions with water: how do solvents affect these processes?

  1993cited by this paper
• Living with water stress: evolution of osmolyte systems.

  1982cited by this paper
• Protein denaturation. C. Theoretical models for the mechanism of denaturation.

  1970cited by this paper
• Protein denaturation.

  1968cited by this paper

• Size-dependent desolvation of hydrophobic nanoparticles in aqueous osmolytes.

  2025cites this paper
• Single-molecule FRET observes opposing effects of urea and TMAO on structurally similar meso- and thermophilic riboswitch RNAs

  2023cites this paper
• Pressure pushes tRNALys3 into excited conformational states

  2023cites this paper
• Solutions: how adaptive changes in cellular fluids enable marine life to cope with abiotic stressors

  2022cites this paper
• An in Vitro Cytomimetic of In‐Cell RNA Folding

  2022cites this paper
• Thermogenetics: Applications come of age.

  2022cites this paper
• Vesicle encapsulation stabilizes intermolecular association and structure formation of functional RNA and DNA.

  2021cites this paper
• Regulation of double luminescence centers based on the evolution of disordered local structure for ratiometric temperature sensing applications

  2021cites this paper
• Cellular responses in marine animals to hydrostatic pressure.

  2020cites this paper
• Bunsen‐Vorlesung: R. Winter / Werner‐Preis: K. Tiefenbacher / Ružička‐Preis: D. Katayev

  2020cites this paper
• Bunsen Lecture: R. Winter / Werner Prize: Konrad Tiefenbacher / Ružička Prize: D. Katayev.

  2020cites this paper
• Urea-aromatic interactions in biology

  2020cites this paper
• Temperature, Hydrostatic Pressure, and Osmolyte Effects on Liquid-Liquid Phase Separation in Protein Condensates: Physical Chemistry and Biological Implications.

  2019cites this paper
• Applications and limitations of regulatory RNA elements in synthetic biology and biotechnology

  2019cites this paper
• Molecular Fitness Landscapes from High-Coverage Sequence Profiling.

  2019cites this paper
• Impact of Macromolecular Crowding and Compression on Protein–Protein Interactions and Liquid–Liquid Phase Separation Phenomena

  2019cites this paper
• Single-molecule insights into the temperature and pressure dependent conformational dynamics of nucleic acids in the presence of crowders and osmolytes.

  2019cites this paper
• The Deep Sea Osmolyte Trimethylamine N-Oxide and Macromolecular Crowders Rescue the Antiparallel Conformation of the Human Telomeric G-Quadruplex from Urea and Pressure Stress.

  2018cites this paper
• Pressure-Induced Dissolution and Reentrant Formation of Condensed, Liquid-Liquid Phase-Separated Elastomeric α-Elastin.

  2018cites this paper
• Exploring the effects of cosolutes and crowding on the volumetric and kinetic profile of the conformational dynamics of a poly dA loop DNA hairpin: a single-molecule FRET study

  2018cites this paper
• Neutron scattering in the biological sciences: progress and prospects.

  2018cites this paper
• Properties of Hydrogen-Bonded Liquids at Interfaces

  2018cites this paper
• Inherently Eu2+/Eu3+ Codoped Sc2O3 Nanoparticles as High‐Performance Nanothermometers

  2018cites this paper
• Antagonistic effects of natural osmolyte mixtures and hydrostatic pressure on the conformational dynamics of a DNA hairpin probed at the single-molecule level.

  2018cites this paper
• Role of solvent properties of water in crowding effects induced by macromolecular agents and osmolytes.

  2017cites this paper
• Crowders and Cosolvents-Major Contributors to the Cellular Milieu and Efficient Means to Counteract Environmental Stresses.

  2017cites this paper
• Osmolyte Effects on the Conformational Dynamics of a DNA Hairpin at Ambient and Extreme Environmental Conditions.

  2017cites this paper
• Equilibrium Denaturation and Preferential Interactions of an RNA Tetraloop with Urea.

  2017cites this paper