The role of the pseudoknot at the 3' end of turnip yellow mosaic virus RNA in minus-strand synthesis by the viral RNA-dependent RNA polymerase

No abstract is available for this paper.

• Publication year

  1997

• Venue

  Journal of Virology

• Publication date

  1997-08-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1128/jvi.71.8.5990-5996.1997PMID 9223489PMCID PMC191855
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Efficient transcription obtained by a new procedure of the tRNA-like structure of turnip yellow mosaic virus by a template-dependent and specific viral RNA polymerase

  1997cited by this paper
• Efficient transcription of the tRNA-like structure of turnip yellow mosaic virus by a template-dependent and specific viral RNA polymerase obtained by a new procedure [corrected].

  1997cited by this paper
• Aminoacylation identity switch of turnip yellow mosaic virus RNA from valine to methionine results in an infectious virus.

  1996cited by this paper
• The turnip yellow mosaic virus tRNA-like structure cannot be replaced by generic tRNA-like elements or by heterologous 3' untranslated regions known to enhance mRNA expression and stability

  1996influential reference
• Interplay of tRNA-like structures from plant viral RNAs with partners of the translation and replication machineries.

  1996cited by this paper
• The 3'-untranslated region of alfalfa mosaic virus RNA 3 contains at least two independent binding sites for viral coat protein.

  1994cited by this paper
• Complete purification of tRNA, charged or modified with hydrophobic groups, by reversed-phase high-performance liquid chromatography on a C4/C18 column system

  1994cited by this paper
• In vitro transcripts of turnip yellow mosaic virus encompassing a long 3' extension or produced from a full-length cDNA clone harbouring a 2 kb-long PCR-amplified segment are infectious.

  1993cited by this paper
• Mutational analysis of the pseudoknot in the tRNA-like structure of turnip yellow mosaic virus RNA. Aminoacylation efficiency and RNA pseudoknot stability.

  1992cited by this paper
• The 3′ promoter region involved in RNA synthesis directed by the turnip yellow mosaic virus genome in vitro

  1991cited by this paper
• Turnip yellow mosaic virus RNAs with anticodon loop substitutions that result in decreased valylation fail to replicate efficiently

  1991cited by this paper
• Aminoacylation of 3' terminal tRNA-like fragments of turnip yellow mosaic virus RNA: the influence of 5' nonviral sequences.

  1990cited by this paper
• Biochemical and biophysical analysis of pseudoknot-containing RNA fragments. Melting studies and NMR spectroscopy.

  1989cited by this paper
• Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity.

  1988cited by this paper
• A new 'sense' RNA approach to block viral RNA replication in vitro.

  1987cited by this paper
• Minus-strand initiation by brome mosaic virus replicase within the 3' tRNA-like structure of native and modified RNA templates.

  1986influential reference
• Interaction of turnip yellow mosaic virus Val‐RNA with eukaryotic elongation factor EF‐1 [alpha]. Search for a function.

  1986cited by this paper
• Deletions in the 3'-terminal tRNA-like structure of brome mosaic virus RNA differentially affect aminoacylation and replication in vitro.

  1985cited by this paper
• The tRNA-like structure at the 3' terminus of turnip yellow mosaic virus RNA. Differences and similarities with canonical tRNA.

  1982cited by this paper
• Turnip yellow mosaic virus-RNA replicase: partial purification of the enzyme from the solubilized enzyme-template complex.

  1974cited by this paper
• Elongation factor-viral genome interaction dependent on the aminoacylation of TYMV and TMV RNAs.

  1973cited by this paper
• Turnip Yellow Mosaic Virus RNA as a Substrate of the Transfer RNA Nucleotidyltransferase II. Incorporation of Cytidine 5′-Monophosphate and Determination of a Short Nucleotide Sequence at the 3′ End of the RNA

  1973cited by this paper
• Enzymatic Binding of Valine to the 3′ End of TYMV-RNA

  1970cited by this paper

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  2009cites this paper
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  2008cites this paper
• SARNA-Predict-pk: Predicting RNA secondary structures including pseudoknots

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• Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate

  2008cites this paper
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  2007cites this paper
• Sarna-predict: a permutation-based simulated annealing algorithm for rna secondary structure prediction

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• Replication of Plus-Sense Viral RNA

  2006influential citation
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  2006influential citation
• Structural and Functional Analysis of the cis-Acting Elements Required for Plus-Strand RNA Synthesis of Bamboo Mosaic Virus

  2005influential citation
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  2005cites this paper
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  2004cites this paper
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  2003cites this paper
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  2003cites this paper
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  2001cites this paper
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  2001cites this paper
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  2000cites this paper
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  2000cites this paper
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  1999cites this paper
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  1999cites this paper
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  1999cites this paper
• Genome of RNA Viruses

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• Genome Organization in RNA Viruses

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  1998cites this paper
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