Ribosomal DNA intergenic spacer sequence in foxtail millet, Setaria italica (L.) P. Beauv. and its characterization and application to typing of foxtail millet landraces.

We determined the sequence of ribosomal DNA (rDNA) intergenic spacer (IGS) of foxtail millet isolated in our previous study, and identified subrepeats in the polymorphic region. We also developed a PCR-based method for identifying rDNA types based on sequence information and assessed 153 accessions of foxtail millet. Results were congruent with our previous works. This study provides new findings regarding the geographical distribution of rDNA variants. This new method facilitates analyses of numerous foxtail millet accessions. It is helpful for typing of foxtail millet germplasms and elucidating the evolution of this millet.

• Publication year

  2005

• Venue

  Hereditas

• Publication date

  2005-02-01

• Fields of study

  Agricultural and Food Sciences, Medicine, Biology

• Identifiers
  DOI 10.1111/J.1601-5223.2005.01905.XPMID 16970610
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The Genetic Basis for Inflorescence Variation Between Foxtail and Green Millet (Poaceae)

  2005cited by this paper
• Phylogenetic analysis of complete 5′ external transcribed spacers of the 18S ribosomal RNA genes of diploid Aegilops and related species (Triticeae, Poaceae)

  2004cited by this paper
• Ribosomal gene spacer length variability in cultivated and wild rice species

  2004cited by this paper
• Traditional maintenance and multiplication of foxtail millet (Setaria italica (L.) P. Beauv.) landraces in China

  2004cited by this paper
• Genetic control of branching in foxtail millet

  2004cited by this paper
• Mitochondrial DNA variation in foxtail millet, Setaria italica (L.) P. Beauv.

  2003cited by this paper
• Geographical variation of nuclear genome RFLPs and genetic differentiation in foxtail millet, Setaria italica (L.) P. Beauv.

  2002cited by this paper
• Structural variation in the Waxy gene and differentiation in foxtail millet [Setaria italica (L.) P. Beauv.]: implications for multiple origins of the waxy phenotype

  2002cited by this paper
• Inflorescence diversification in the panicoid "bristle grass" clade (Paniceae, Poaceae): evidence from molecular phylogenies and developmental morphology.

  2002cited by this paper
• Phylogenetic and genomic relationships in Setaria italica and its close relatives based on the molecular diversity and chromosomal organization of 5S and 18S-5.8S-25S rDNA genes

  2001cited by this paper
• A comparative study of the structure of the rDNA intergenic spacer of Lens culinaris Medik., and other legume species.

  2000cited by this paper
• Assessment of genetic relationships between Setaria italica and its wild relative S. viridis using AFLP markers

  2000cited by this paper
• The complete external transcribed spacer of 18S-26S rDNA: amplification and phylogenetic utility at low taxonomic levels in asteraceae and closely allied families.

  2000cited by this paper
• Genetic variability in foxtail millet, Setaria italica (L.) P. Beauv.: Identification and classification of lines with RAPD markers

  1999cited by this paper
• Genetic variability in foxtail millet, Setaria italica (L.) P. Beauv. : RFLP using a heterologous rDNA probe

  1998cited by this paper
• Construction of RFLP-based maps of foxtail millet, Setaria italica (L.) P. Beauv.

  1998cited by this paper
• Intraspecific and interspecific variation in Setaria revealed by RAPD analysis

  1998cited by this paper
• Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae).

  1998cited by this paper
• Phylogenetic relationships among Fagopyrum species revealed by the nucleotide sequences of the ITS region of the nuclear rRNA gene.

  1998cited by this paper
• Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa)

  1998cited by this paper
• Intergenic ribosomal spacer variability in hexaploid oat cultivars and landraces

  1997cited by this paper
• Ribosomal DNA variation in foxtail millet, Setaria italica (L.) P. Beauv., and a survey of variation from Europe and Asia

  1997cited by this paper
• Zea systematics: ribosomal ITS evidence.

  1996cited by this paper
• Length Polymorphism in the Ribosomal DNA Intergenic Spacer of Rye and Slender Wild Oats

  1995cited by this paper
• Structure and comparative analysis of the rDNA intergenic spacer of Brassica rapa. Implications for the function and evolution of the Cruciferae spacer.

  1995cited by this paper
• The structure of the rDNA intergenic spacer of Avena sativa L.: a comparative study

  1994cited by this paper
• Fine structure and evolution of the rDNA intergenic spacer in rice and other cereals

  1993influential reference
• Variation of the intergenic spacer region of ribosomal DNA in cultivated and wild rice species.

  1990cited by this paper
• Genetic Properties of Italian Millet(Setaria italica Beauv.) Collected by Kagoshima University

  1988cited by this paper
• Ribosomal RNA genes in plants: variability in copy number and in the intergenic spacer

  1987cited by this paper
• Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.

  1984cited by this paper
• A plant DNA minipreparation: Version II

  1983cited by this paper

• Evaluation of Lipoxin A4 as A Marker of Severity of Bronchial Asthma in Pediatrics in Zagazig University Hospital

  2020cites this paper
• The Foxtail Millet Genome

  2017cites this paper
• Foxtail Millet Germplasm and Inheritance of Morphological Characteristics

  2017cites this paper
• Genetic Structure of Foxtail Millet Landraces

  2017cites this paper
• Genetic Differentiation and Crop Evolution of Foxtail Millet

  2017cites this paper
• Genetic diversity of eight millet genera assessed by using molecular and morphological markers

  2016cites this paper
• Comparative analysis of genetic diversity of 8 millet genera revealed by ISSR markers

  2015cites this paper
• Structure of intergenic spacer IGS1 of ribosomal operon from Schistidium mosses

  2015cites this paper
• Geographical variation of foxtail millet, Setaria italica (L.) P. Beauv. based on rDNA PCR–RFLP

  2012cites this paper
• Development and use of novel SSR markers for molecular genetic diversity in Italian millet (Setaria italica L.)

  2012influential citation
• rDNA polymorphism of foxtail millet (Setaria italica ssp. italica) landraces in northern Pakistan and Afghanistan and in its wild ancestor (S. italica ssp. viridis)

  2011cites this paper
• Single Integration and Spread of a Copia-Like Sequence Nested in rDNA Intergenic Spacers of Allium cernuum (Alliaceae)

  2010cites this paper
• Foxtail Millet: A Sequence-Driven Grass Model System[W]

  2009cites this paper
• Investigation of distal repetitive sequences in the genus allium

  2009cites this paper
• Phylogenetic analysis of the rDNA intergenic spacer subrepeats and its implication for the domestication history of foxtail millet, Setaria italica

  2006cites this paper