Analysis of the thermodynamics of binding of an SH3 domain to proline-rich peptides using a chimeric fusion protein.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Journal of Molecular Biology

• Publication date

  2008-03-14

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1016/j.jmb.2007.11.060PMID 18234212
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The high‐resolution NMR structure of a single‐chain chimeric protein mimicking a SH3–peptide complex

  2007cited by this paper
• Implications of SH3 domain structure and dynamics for protein regulation and drug design

  2007cited by this paper
• Intramolecular binding of a proximal PPII helix to an SH3 domain in the fusion protein SH3Hck: PPIIhGAP

  2007cited by this paper
• The high-resolution NMR structure of the R21A Spc-SH3:P41 complex: Understanding the determinants of binding affinity by comparison with Abl-SH3

  2007cited by this paper
• Quantitative relation between intermolecular and intramolecular binding of pro-rich peptides to SH3 domains.

  2006cited by this paper
• Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences.

  2006cited by this paper
• The paradoxical thermodynamic basis for the interaction of ethylene glycol, glycine, and sarcosine chains with bovine carbonic anhydrase II: an unexpected manifestation of enthalpy/entropy compensation.

  2006cited by this paper
• Effects of co-operative ligand binding on protein amide NH hydrogen exchange.

  2006cited by this paper
• Conformational Basis for SH2-Tyr(P)527 Binding in Src Inactivation*

  2006cited by this paper
• Efficient, accurate calculation of rotational diffusion and NMR relaxation of globular proteins from atomic-level structures and approximate hydrodynamic calculations.

  2005cited by this paper
• Hydrogen exchange and ligand binding: Ligand‐dependent and ligand‐independent protection in the Src SH3 domain

  2005cited by this paper
• Heat capacity in proteins.

  2005cited by this paper
• Thermodynamics of binding to SH3 domains: the energetic impact of polyproline II (PII) helix formation.

  2004cited by this paper
• Understanding noncovalent interactions: ligand binding energy and catalytic efficiency from ligand-induced reductions in motion within receptors and enzymes.

  2004cited by this paper
• Contributions of tryptophan side chains to the far-ultraviolet circular dichroism of proteins

  2004cited by this paper
• Thermodynamic mechanism and consequences of the polyproline II (PII) structural bias in the denatured states of proteins.

  2004cited by this paper
• Structure and regulation of Src family kinases

  2004cited by this paper
• Thermodynamic dissection of the binding energetics of proline-rich peptides to the Abl-SH3 domain: implications for rational ligand design.

  2004cited by this paper
• Structural investigations of a GYF domain covalently linked to a proline-rich peptide

  2003cited by this paper
• Ligand‐induced changes in dynamics in the RT loop of the C‐terminal SH3 domain of Sem‐5 indicate cooperative conformational coupling

  2003cited by this paper
• Host‐guest scale of left‐handed polyproline II helix formation

  2003cited by this paper
• NMR detection of multiple transitions to low‐populated states in azurin

  2003cited by this paper
• A binding event converted into a folding event

  2003cited by this paper
• Determinants of intra versus intermolecular self-association within the regulatory domains of Rlk and Itk.

  2003cited by this paper
• The effect of the polyproline II (PPII) conformation on the denatured state entropy

  2003cited by this paper
• How SH3 domains recognize proline.

  2002cited by this paper
• Heat does not come in different colours: entropy-enthalpy compensation, free energy windows, quantum confinement, pressure perturbation calorimetry, solvation and the multiple causes of heat capacity effects in biomolecular interactions.

  2001cited by this paper
• SH3 domains: complexity in moderation.

  2001cited by this paper
• Host-guest study of left-handed polyproline II helix formation.

  2001cited by this paper
• SH2 and SH3 domains as targets for anti-proliferative agents.

  2001cited by this paper
• The role of backbone motions in ligand binding to the c-Src SH3 domain.

  2001cited by this paper
• The importance of being proline: the interaction of proline‐rich motifs in signaling proteins with their cognate domains

  2000cited by this paper
• Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data

  2000cited by this paper
• Exact analysis of competition ligand binding by displacement isothermal titration calorimetry.

  2000cited by this paper
• Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients

  1999cited by this paper
• Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition

  1999cited by this paper
• Thermodynamic analysis of alpha-spectrin SH3 and two of its circular permutants with different loop lengths: discerning the reasons for rapid folding in proteins.

  1999cited by this paper
• Left‐handed polyproline II helix formation is (very) locally driven

  1998cited by this paper
• Crystal structure of the abl-SH3 domain complexed with a designed high-affinity peptide ligand: implications for SH3-ligand interactions.

  1998cited by this paper
• RT loop flexibility enhances the specificity of Src family SH3 domains for HIV-1 Nef.

  1998cited by this paper
• Exploiting the basis of proline recognition by SH3 and WW domains: design of N-substituted inhibitors.

  1998cited by this paper
• Regulatory intramolecular association in a tyrosine kinase of the Tec family

  1997cited by this paper
• How Src exercises self-restraint

  1997cited by this paper
• The enthalpy change in protein folding and binding: Refinement of parameters for structure‐based calculations

  1996cited by this paper
• Docking enzyme‐inhibitor complexes using a preference‐based free‐energy surface

  1996cited by this paper
• Rational design of specific high-affinity peptide ligands for the Abl-SH3 domain.

  1996cited by this paper
• Structural and thermodynamic characterization of the interaction of the SH3 domain from Fyn with the proline-rich binding site on the p85 subunit of PI3-kinase.

  1996cited by this paper
• The magnitude of the backbone conformational entropy change in protein folding

  1996cited by this paper
• Energetics of protein structure.

  1995cited by this paper
• Structural determinants of peptide-binding orientation and of sequence specificity in SH3 domains

  1995cited by this paper
• NMRPipe: A multidimensional spectral processing system based on UNIX pipes

  1995cited by this paper
• Structural determinants of peptide-binding orientation and of sequence specificity in SH3 domains

  1995cited by this paper
• A calorimetric study of the thermal stability of barstar and its interaction with barnase.

  1995cited by this paper
• Win some, lose some: enthalpy-entropy compensation in weak intermolecular interactions.

  1995cited by this paper
• Coupling of local folding to site-specific binding of proteins to DNA.

  1994cited by this paper
• Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

  1994cited by this paper
• NMR View: A computer program for the visualization and analysis of NMR data

  1994cited by this paper
• A calorimetric study of the thermal stability of barnase and its interaction with 3'GMP.

  1994cited by this paper
• Characterization of the interaction of natural proline-rich peptides with five different SH3 domains.

  1994cited by this paper
• Identification of a ten-amino acid proline-rich SH3 binding site.

  1993cited by this paper
• Sensitivity improvement in three-dimensional heteronuclear correlation NMR spectroscopy

  1992cited by this paper
• Effect of antibody binding on protein motions studied by hydrogen-exchange labeling and two-dimensional NMR.

  1992cited by this paper
• Improved accuracy of heteronuclear transverse relaxation time measurements in macromolecules. elimination of antiphase contributions

  1991cited by this paper
• Influence of proline residues on protein conformation.

  1991cited by this paper
• Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solution: hydration effect.

  1990cited by this paper
• Study of strong to ultratight protein interactions using differential scanning calorimetry.

  1990cited by this paper
• Calculation of protein extinction coefficients from amino acid sequence data.

  1989cited by this paper
• Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

  1989cited by this paper
• A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions.

  1988cited by this paper
• Enthalpy-entropy compensation and heat capacity changes for protein-ligand interactions: general thermodynamic models and data for the binding of nucleotides to ribonuclease A.

  1983cited by this paper
• Temperature-dependent ΔC0p generated by a shift in equilibrium between macrostates of an enzyme

  1981cited by this paper
• Temperature-dependent delta C0p generated by a shift in equilibrium between macrostates of an enzyme.

  1981cited by this paper
• Enthalpy–entropy compensation phenomena in water solutions of proteins and small molecules: A ubiquitous properly of water

  1970cited by this paper

• Functional Design and Biophysical Characterization of Analyte-Responsive Polymers

  2025cites this paper
• Computational analysis and protein engineering of artificial PDZ domain/self-binding peptide fusion biomacromolecular system with molecular switch functionality.

  2025cites this paper
• Disordered proteins mitigate the temperature dependence of site-specific binding free energies

  2023cites this paper
• Understanding binding affinity and specificity of modular protein domains: A focus in ligand design for the polyproline-binding families.

  2022cites this paper
• Obituary: Nico van Nuland 1961–2017

  2018cites this paper
• Protein Characterization by Thermal Property Measurement

  2017cites this paper
• Development and Application of a High Throughput Protein Unfolding Kinetic Assay

  2016cites this paper
• A semi-automated method for purification of milligram quantities of proteins on the QIAcube.

  2014cites this paper
• Differential scanning calorimetry as a tool for protein folding and stability.

  2013cites this paper
• Structures composing protein domains.

  2013cites this paper
• Comparison between FTIR and XPS characterization of amino acid glycine adsorption onto diamond-like carbon (DLC) and silicon doped DLC

  2013cites this paper
• Differential Dynamic Engagement within 24 SH3 Domain: Peptide Complexes Revealed by Co-Linear Chemical Shift Perturbation Analysis

  2012cites this paper
• Vibrational and AFM studies of adsorption of glycine on DLC and silicon-doped DLC

  2012cites this paper
• High-Resolution Crystal Structure of Spectrin SH3 Domain Fused with a Proline-Rich Peptide

  2011cites this paper
• Three-state thermal unfolding of onconase.

  2011cites this paper
• Survey of the year 2008: applications of isothermal titration calorimetry

  2010cites this paper
• Evaluation of folding co-operativity of a chimeric protein based on the molecular recognition between polyproline ligands and SH3 domains.

  2009cites this paper
• Thermodynamic characterization of the folding equilibrium of the human Nedd4-WW4 domain: at the frontiers of cooperative folding.

  2009cites this paper