Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome?

No abstract is available for this paper.

• Publication year

  2000

• Venue

  Journal of Theoretical Biology

• Publication date

  2000-02-21

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1006/JTBI.1999.1062PMID 10666362
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Advances in Mutagenesis Research

  2011cited by this paper
• Intrastrand parity rules of DNA base composition and usage biases of synonymous codons

  2005cited by this paper
• Asymmetry of nucleotide composition of prokaryotic chromosomes

  1999cited by this paper
• Effect of replication on the third base of codons

  1999cited by this paper
• Identification of putative chromosomal origins of replication in Archaea

  1999cited by this paper
• How does replication-associated mutational pressure influence amino acid composition of proteins?

  1999cited by this paper
• Origin and properties of non-coding ORFs in the yeast genome.

  1999cited by this paper
• Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases.

  1999cited by this paper
• Universal replication biases in bacteria

  1999cited by this paper
• Strand-specific compositional asymmetries in double-stranded DNA viruses.

  1999cited by this paper
• Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms.

  1999influential reference
• DNA replication: one strand may be more equal.

  1998cited by this paper
• Eukaryote genome duplication - where's the evidence?

  1998cited by this paper
• Oxidized, deaminated cytosines are a source of C --> T transitions in vivo.

  1998cited by this paper
• Complete genome sequence of Treponema pallidum, the syphilis spirochete.

  1998cited by this paper
• Replicational and transcriptional selection on codon usage in Borrelia burgdorferi.

  1998cited by this paper
• Patterns of Genome Organization in Bacteria

  1998influential reference
• Extent of genomic rearrangement after genome duplication in yeast.

  1998cited by this paper
• Analyzing genomes with cumulative skew diagrams.

  1998influential reference
• Base Composition Skews, Replication Orientation, and Gene Orientation in 12 Prokaryote Genomes

  1998cited by this paper
• Skewed oligomers and origins of replication.

  1998influential reference
• Comparative DNA analysis across diverse genomes.

  1998cited by this paper
• Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi

  1998cited by this paper
• The effect of DNA phase structure on DNA walks

  1998cited by this paper
• The base contents of A, C, G or U for the three codon positions and the total coding sequences show positive correlation.

  1998cited by this paper
• Strand compositional asymmetry in bacterial and large viral genomes.

  1998cited by this paper
• Precise sequence complementarity between yeast chromosome ends and two classes of just-subtelomeric sequences.

  1998influential reference
• The genome sequence of Rickettsia prowazekii and the origin of mitochondria

  1998cited by this paper
• Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome.

  1998cited by this paper
• Molecular evidence for an ancient duplication of the entire yeast genome

  1997cited by this paper
• The complete genome sequence of Escherichia coli K-12.

  1997cited by this paper
• Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi

  1997cited by this paper
• Archaeal genomics: an overview.

  1997cited by this paper
• The yeast genome directory.

  1997cited by this paper
• Strand asymmetries in DNA evolution.

  1997cited by this paper
• Asymmetry of Coding Versus Noncoding Strand in Coding Sequences of Different Genomes

  1997cited by this paper
• the yeast genome

  1997cited by this paper
• The complete genome sequence of the Gram-positive bacterium Bacillus subtilis

  1997cited by this paper
• Preferential replication-dependent mutagenesis in the lagging DNA strand in

  1996cited by this paper
• Asymmetries Generated by Transcription-Coupled Repair in Enterobacterial Genes

  1996cited by this paper
• Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli.

  1996cited by this paper
• Preferential replication-dependent mutagenesis in the lagging DNA strand inEscherichia coli

  1996cited by this paper
• Origin of Replication of Mycoplasma genitalium

  1996cited by this paper
• Asymmetric substitution patterns in the two DNA strands of bacteria.

  1996cited by this paper
• Differential DNA secondary structure-mediated deletion mutation in the leading and lagging strands

  1995cited by this paper
• Dinucleotide relative abundance extremes: a genomic signature.

  1995cited by this paper
• Properties of a general model of DNA evolution under no-strand-bias conditions

  1995cited by this paper
• Yeast genome

  1995cited by this paper
• Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro

  1994cited by this paper
• Complete DNA sequence of yeast chromosome XI

  1994cited by this paper
• The effect on chromosome stability of deleting replication origins

  1993cited by this paper
• Two yeast chromosomes are related by a fossil duplication of their centromeric regions.

  1993cited by this paper
• Instability and decay of the primary structure of DNA

  1993cited by this paper
• Greater susceptibility to mutations in lagging strand of DNA replication in Escherichia coli than in leading strand

  1993cited by this paper
• Greater susceptibility to mutations in lagging strand of DNA replication in Escherichia coli than in leading strand.

  1993cited by this paper
• A replication map of a 61-kb circular derivative of Saccharomyces cerevisiae chromosome III.

  1992cited by this paper
• Prokaryotic DNA replication.

  1992cited by this paper
• Biological asymmetries and the fidelity of eukaryotic DNA replication

  1992cited by this paper
• The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae

  1992cited by this paper
• Analysis of distribution of bases in the coding sequences by a diagrammatic technique.

  1991cited by this paper
• Evidence suggesting that the ARS elements associated with silencers of the yeast mating-type locus HML do not function as chromosomal DNA replication origins

  1991cited by this paper
• Fidelity mechanisms in DNA replication.

  1991cited by this paper
• Heterogeneity of DNA repair at the gene level.

  1991cited by this paper
• A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy.

  1990influential reference
• Sequencing of Saccharomyces telomeres cloned using T4 DNA polymerase reveals two domains

  1990cited by this paper
• The subtelomeric Y' repeat family in Saccharomyces cerevisiae: an experimental system for repeated sequence evolution.

  1990cited by this paper
• Evolution of DNA Sequence Contributions of Mutational Bias and Selection to the Origin of Chromosomal Compartments

  1990cited by this paper
• Organization and plasticity of enterobacterial genomes.

  1988cited by this paper
• Inequality in mutation rates of the two strands of DNA

  1987cited by this paper
• DNA sequences of telomeres maintained in yeast

  1984cited by this paper
• Features of Bacteriophage λ: Analysis of the Complete Nucleotide Sequence

  1983cited by this paper
• Features of bacteriophage lambda: analysis of the complete nucleotide sequence.

  1983cited by this paper
• Autonomously replicating sequences in Saccharomyces cerevisiae.

  1980cited by this paper
• On the denaturation of deoxyribonucleic acid. II. Effects of concentration.

  1967cited by this paper
• On the denaturation of deoxyribonucleic acid.

  1966cited by this paper
• Chemical specificity of nucleic acids and mechanism of their enzymatic degradation

  1950cited by this paper

• Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals

  2019cites this paper
• Optimization of amino acid replacement costs by mutational pressure in bacterial genomes

  2017cites this paper
• Mathematical modelling of whole chromosome replication. Nucleic Acids Research, 38 (17). pp. 5623-5633.

  2017cites this paper
• Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: patterns of repeated sequences and physicochemical signatures

  2016cites this paper
• Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes

  2015cites this paper
• Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition

  2014influential citation
• Toward a General Model for the Evolution of DNA Replication in Three Domains of Life

  2014cites this paper
• Megabase replication domains along the human genome: relation to chromatin structure and genome organisation.

  2013cites this paper
• Strand symmetry and nonrandom DNA trimer arrangement in yeast Saccharomyces cerevisiae chromosomes

  2013cites this paper
• Linking the DNA strand asymmetry to the spatio-temporal replication program

  2012cites this paper
• Measures of Compositional Strand Bias Related to Replication Machinery and its Applications

  2012cites this paper
• The mutational profile of the yeast genome is shaped by replication.

  2012cites this paper
• Asymmetry Indices for Analysis and Prediction of Replication Origins in Eukaryotic Genomes

  2012cites this paper
• FractalsFractal and WaveletsWavelets : What Can We Learn on Transcription and Replication from Wavelet-Based Multifractal AnalysisMultifractal analysis of DNA SequencesDNA sequence ?

  2012cites this paper
• Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control.

  2012cites this paper
• DNA replication induces compositional biases in yeast.

  2012cites this paper
• Linking the DNA strand asymmetry to the spatio-temporal replication program

  2012cites this paper
• Multi-scale coding of genomic information: From DNA sequence to genome structure and function

  2011cites this paper
• Strand-specific Composition Bias in Bacterial Genomes

  2011cites this paper
• Wavelet-based method to disentangle transcription- and replication-associated strand asymmetries in mammalian genomes

  2010cites this paper
• Mathematical modelling of whole chromosome replication

  2010cites this paper
• Fractals and wavelets: What can we learn on transcription and replication from wavelet-based multifractal analysis of DNA sequences?

  2009cites this paper
• The relationship between DNA replication and human genome organization.

  2009cites this paper
• From GC skews to wavelets: a gentle guide to the analysis of compositional asymmetries in genomic data.

  2008cites this paper
• Optimisation of Asymmetric Mutational Pressure and Selection Pressure Around the Universal Genetic Code

  2008cites this paper
• Strand compositional asymmetries in vertebrate large genes

  2008cites this paper
• Replication-associated strand asymmetries in vertebrate genomes and implications for replicon size, DNA replication origin, and termination.

  2006cites this paper
• Large-scale analysis of the human genome: From DNA sequence analysis to the modeling of replication in higher eukaryotes

  2006cites this paper
• Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins.

  2005cites this paper
• From DNA sequence analysis to modeling replication in the human genome.

  2005cites this paper
• Higher mutation rate helps to rescue genes from the elimination by selection.

  2005cites this paper
• The replication-related organization of bacterial genomes.

  2004cites this paper
• Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.

  2004cites this paper
• Characterization of Kluyveromyces lactis subtelomeric sequences including a distal element with strong purine/pyrimidine strand bias

  2004cites this paper
• Molecular evolution meets the genomics revolution

  2003cites this paper
• Transcription‐coupled TA and GC strand asymmetries in the human genome

  2003cites this paper
• Strand Compositional Asymmetries of Nuclear DNA in Eukaryotes

  2003influential citation
• Cloning and characterization of subtelomeric regions of Kluyveromyces lactis

  2003cites this paper
• Base frequencies at the second codon position of Vibrio cholerae genes connect with protein function.

  2002cites this paper
• Applications of Recursive Segmentation to the Analysis of DNA Sequences

  2002cites this paper
• Asymmetric directional mutation pressures in bacteria

  2002cites this paper
• DNA asymmetry and the replicational mutational pressure.

  2001cites this paper
• Analysis of the Codon Usage Pattern in the Vibrio Cholerae Genome

  2001cites this paper
• Current Awareness on Comparative and Functional Genomics

  2001cites this paper
• Current awareness on yeast.

  2000cites this paper
• Mini Review Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals

  year unknowncites this paper