Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Development

• Publication date

  2013-08-15

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1242/dev.098012PMID 23863485PMCID PMC3737719
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress.

  2013cited by this paper
• CloudMap: A Cloud-Based Pipeline for Analysis of Mutant Genome Sequences

  2012cited by this paper
• Multidimensional regulation of gene expression in the C. elegans embryo

  2012cited by this paper
• Wnt regulates spindle asymmetry to generate asymmetric nuclear β-catenin in C. elegans.

  2011cited by this paper
• Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development.

  2011cited by this paper
• Mounting Caenorhabditis elegans embryos for live imaging of embryogenesis.

  2011cited by this paper
• Analysis of Multiple Ethyl Methanesulfonate-Mutagenized Caenorhabditis elegans Strains by Whole-Genome Sequencing

  2010cited by this paper
• cdc-25.2, a C. elegans ortholog of cdc25, is required to promote oocyte maturation

  2010cited by this paper
• Endoderm development in Caenorhabditis elegans: the synergistic action of ELT-2 and -7 mediates the specification→differentiation transition.

  2010cited by this paper
• A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D

  2010cited by this paper
• Variability in gene expression underlies incomplete penetrance

  2009cited by this paper
• Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition

  2009cited by this paper
• Control of cell cycle timing during C. elegans embryogenesis.

  2008cited by this paper
• Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression

  2008cited by this paper
• Imaging individual mRNA molecules using multiple singly labeled probes

  2008cited by this paper
• Automated analysis of embryonic gene expression with cellular resolution in C. elegans

  2008cited by this paper
• Mediators of reprogramming: transcription factors and transitions through mitosis

  2008cited by this paper
• CDC-25.1 stability is regulated by distinct domains to restrict cell division during embryogenesis in C. elegans

  2008cited by this paper
• Function of the Caenorhabditis elegans ABC transporter PGP-2 in the biogenesis of a lysosome-related fat storage organelle.

  2007cited by this paper
• The embryonic cell lineage of the nematode Halicephalobus gingivalis (Nematoda: Cephalobina: Panagrolaimoidea)

  2007cited by this paper
• Automated cell lineage tracing in Caenorhabditis elegans.

  2006cited by this paper
• AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis

  2006cited by this paper
• The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree

  2006cited by this paper
• Defining the transcriptional redundancy of early bodywall muscle development in C. elegans: evidence for a unified theory of animal muscle development.

  2006cited by this paper
• The myogenic potency of HLH-1 reveals wide-spread developmental plasticity in early C. elegans embryos

  2005influential reference
• Regulation of temporal identity transitions in Drosophila neuroblasts.

  2005cited by this paper
• Cell cycle and cell-fate determination in Drosophila neural cell lineages.

  2005cited by this paper
• Mechanism of mRNA transport in the nucleus.

  2005cited by this paper
• Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome

  2003cited by this paper
• Making worm guts: the gene regulatory network of the Caenorhabditis elegans endoderm.

  2002cited by this paper
• Cdk1 triggers association of RNA polymerase to cell cycle promoters only after recruitment of the mediator by SBF.

  2001cited by this paper
• DNA replication defects delay cell division and disrupt cell polarity in early Caenorhabditis elegans embryos.

  2000influential reference
• Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter.

  1999cited by this paper
• Onset of C. elegans gastrulation is blocked by inhibition of embryonic transcription with an RNA polymerase antisense RNA.

  1996cited by this paper
• Activation of transcription in Drosophila embryos is a gradual process mediated by the nucleocytoplasmic ratio.

  1996cited by this paper
• Mutations in the clk-1 gene of Caenorhabditis elegans affect developmental and behavioral timing.

  1995cited by this paper
• The role of the cell cycle and cytokinesis in regulating neuroblast sublineage gene expression in the Drosophila CNS.

  1995cited by this paper
• Cell fate specification by even-skipped expression in the Drosophila nervous system is coupled to cell cycle progression.

  1995cited by this paper
• MyoD and myogenesis in C. elegans

  1995cited by this paper
• Soma-germline asymmetry in the distributions of embryonic RNAs in Caenorhabditis elegans.

  1994cited by this paper
• Early transcription in Caenorhabditis elegans embryos.

  1994cited by this paper
• Temporal regulation in the early embryo: is MBT too good to be true?

  1992cited by this paper
• DNA synthesis and the control of embryonic gene expression in C. elegans.

  1988cited by this paper
• Conditional absence of mitosis-specific antigens in a temperature-sensitive embryonic-arrest mutant of Caenorhabditis elegans.

  1987cited by this paper
• Cell-lineage and developmental defects of temperature-sensitive embryonic arrest mutants of the nematodeCaenorhabditis elegans

  1984cited by this paper
• The embryonic cell lineage of the nematode Caenorhabditis elegans.

  1983cited by this paper
• Timing mechanisms in early embryonic development.

  1982cited by this paper
• Genetic analysis of temperature-sensitive embryogenesis mutants in Caenorhabditis elegans.

  1981cited by this paper
• Cell lineages and developmental defects of temperature-sensitive embryonic arrest mutants in Caenorhabditis elegans.

  1980cited by this paper

• Coupling and decoupling of the cell cycle from cell differentiation in development.

  2025cites this paper
• Cell cycle-driven transcriptome maturation confers multilineage competence to cardiopharyngeal progenitors

  2025cites this paper
• Partial coupling of the proliferation and differentiation programs during C. elegans intestine development.

  2025cites this paper
• Partial coupling of the proliferation and differentiation programs during C. elegans intestine development

  2025cites this paper
• A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types

  2024cites this paper
• Cell state transitions are decoupled from cell division during early embryo development

  2024cites this paper
• Cell cycle-driven transcriptome maturation confers multilineage competence to cardiopharyngeal progenitors

  2024cites this paper
• The asynchrony in the exit from naive pluripotency cannot be explained by differences in the cell cycle phase

  2023cites this paper
• Mechanisms of lineage specification in Caenorhabditis elegans.

  2023cites this paper
• The ELT-3 GATA Factor Specifies Endoderm in Caenorhabditis angaria in an ancestral gene network

  2022cites this paper
• Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis.

  2022cites this paper
• The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network

  2022cites this paper
• Single cell biology—a Keystone Symposia report

  2021cites this paper
• Transcript accumulation rates in the early Caenorhabditis elegans embryo

  2021cites this paper
• The transcription factor ELT-2 positively and negatively impacts direct target genes to modulate the Caenorhabditis elegans intestinal transcriptome

  2021cites this paper
• Transcriptome profiling of the Caenorhabditis elegans intestine reveals that ELT-2 negatively and positively regulates intestinal gene expression within the context of a gene regulatory network

  2021cites this paper
• Imaging of native transcription and transcriptional dynamics in vivo using a tagged Argonaute protein

  2020cites this paper
• Physically asymmetric division of the C. elegans zygote ensures invariably successful embryogenesis

  2020cites this paper
• Meta-analysis of Caenorhabditis elegans single-cell developmental data reveals multi-frequency oscillation in gene activation

  2019cites this paper
• C. elegans exhibits coordinated oscillation in gene activation in single-cell developmental data

  2018cites this paper
• C. Elegans Exhibits Coordinated Oscillation in Gene Expression During Development

  2018cites this paper
• The folic acid metabolism gene mel-32/Shmt is required for normal cell cycle lengths in Caenorhabditis elegans.

  2018cites this paper
• Gene regulation in four dimensions

  2018cites this paper
• Systematic characterisation of temporal and fate asymmetries and its regulation during Caenorhabditis elegans Embryogensis /Ho Vincy Wing Sze.

  2017cites this paper
• Developmental Dynamics from single-cell data in C . elegans

  2016cites this paper
• Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos

  2016influential citation
• Coordination of division timing for intestine precursor cells during C.elegans embryogenesis

  2016cites this paper
• Dissecting the Worm Intestinal Genetic Network with Quantitative Measurement and Modeling

  2016influential citation
• Probing and rearranging the transcription factor network controlling the C. elegans endoderm

  2016cites this paper
• The function and regulation of the GATA factor ELT-2 in the C. elegans endoderm

  2016cites this paper
• UNIVERSITY OF CALIFORNIA, SAN DIEGO Dissecting the Worm Intestinal Genetic Network with Quantitative Measurement and Modeling A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy

  2016influential citation
• Timing of Tissue-specific Cell Division Requires a Differential Onset of Zygotic Transcription during Metazoan Embryogenesis*

  2016cites this paper
• Mutagenesis of GATA motifs controlling the endoderm regulator elt-2 reveals distinct dominant and secondary cis-regulatory elements.

  2016cites this paper
• Combinatorial decoding of the invariant C. elegans embryonic lineage in space and time

  2016influential citation
• mRNA quantification using single-molecule FISH in Drosophila embryos

  2016cites this paper
• Quantitative gene expression analysis in Caenorhabditis elegans using single molecule RNA FISH.

  2016cites this paper
• Rapid and Ef fi cient Identi fi cation of Caenorhabditis elegans Legacy Mutations Using Hawaiian SNP-Based Mapping and Whole-Genome Sequencing

  2015cites this paper
• MED GATA factors promote robust development of the C. elegans endoderm.

  2015cites this paper
• Single human cells use transcriptional mechanisms to compensate for differences in cell size and DNA content

  2015cites this paper
• Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis.

  2015influential citation
• Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms.

  2015cites this paper
• Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry

  2015cites this paper
• Rapid and Efficient Identification of Caenorhabditis elegans Legacy Mutations Using Hawaiian SNP-Based Mapping and Whole-Genome Sequencing

  2015cites this paper
• Live imaging reveals spatial separation of parental chromatin until the four-cell stage in Caenorhabditis elegans embryos.

  2015cites this paper
• Using variability in gene expression as a tool for studying gene regulation

  2013cites this paper
• The 4 th International Workshop on Stochasticity in Biochemical Reaction Networks November 17 , 2013

  2013cites this paper