The contribution of proteomics to the unveiling of the survival strategies used by Pseudomonas putida in changing and hostile environments

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Proteomics

• Publication date

  2013-10-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1002/pmic.201200503PMID 23625785
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems.

  2013cited by this paper
• Pseudomonas putida growing at low temperature shows increased levels of CrcZ and CrcY sRNAs, leading to reduced Crc-dependent catabolite repression.

  2013cited by this paper
• Regulatory Tasks of the Phosphoenolpyruvate-Phosphotransferase System of Pseudomonas putida in Central Carbon Metabolism

  2012cited by this paper
• Industrial biotechnology of Pseudomonas putida and related species

  2012cited by this paper
• Responses of Pseudomonas putida to toxic aromatic carbon sources.

  2012cited by this paper
• Two small RNAs, CrcY and CrcZ, act in concert to sequester the Crc global regulator in Pseudomonas putida, modulating catabolite repression

  2012cited by this paper
• Pseudomonas putida response to cadmium: changes in membrane and cytosolic proteomes.

  2012cited by this paper
• Sticky Situations: Key Components That Control Bacterial Surface Attachment

  2012cited by this paper
• Pseudomonas biofilm matrix composition and niche biology.

  2012cited by this paper
• Metabolic specialization and the assembly of microbial communities

  2012cited by this paper
• Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

  2012cited by this paper
• Functional genomics of the initial phase of cold adaptation of Pseudomonas putida KT2440.

  2011cited by this paper
• Key two-component regulatory systems that control biofilm formation in Pseudomonas aeruginosa.

  2011cited by this paper
• Regulation by small RNAs in bacteria: expanding frontiers.

  2011cited by this paper
• A mutation in dnaK causes stabilization of the heat shock sigma factor σ32, accumulation of heat shock proteins and increase in toluene-resistance in Pseudomonas putida.

  2011cited by this paper
• Proteomic characterization of the Pseudomonas putida KT2440 global response to a monocyclic aromatic compound by iTRAQ analysis and 1DE-MudPIT.

  2011cited by this paper
• Growth of Pseudomonas putida at low temperature: global transcriptomic and proteomic analyses.

  2011cited by this paper
• Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species

  2011cited by this paper
• cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

  2011cited by this paper
• Probing the proteome response to toluene exposure in the solvent tolerant Pseudomonas putida S12.

  2011cited by this paper
• Phosphoproteomic analysis reveals the multiple roles of phosphorylation in pathogenic bacterium Streptococcus pneumoniae.

  2010cited by this paper
• Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge

  2010cited by this paper
• Comparative transcriptomics and proteomics of p-hydroxybenzoate producing Pseudomonas putida S12: novel responses and implications for strain improvement

  2010cited by this paper
• Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment.

  2010cited by this paper
• Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome.

  2010cited by this paper
• How do bacteria sense and respond to low temperature?

  2010cited by this paper
• Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa

  2009cited by this paper
• Analysis of the Pseudomonas putida CA-3 proteome during growth on styrene under nitrogen-limiting and non-limiting conditions.

  2009cited by this paper
• Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways.

  2009influential reference
• The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: Evidence from proteomic and genomic analyses

  2009cited by this paper
• Proteomic analysis of the response of the plant growth-promoting bacterium Pseudomonas putida UW4 to nickel stress

  2009cited by this paper
• The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation

  2009cited by this paper
• Copper and cadmium: responses in Pseudomonas putida KT2440

  2009cited by this paper
• Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non‐pathogenic Pseudomonas species

  2009cited by this paper
• Regulatory RNAs in bacteria.

  2009cited by this paper
• A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

  2008cited by this paper
• A Dominated Coupling From The Past algorithm for the stochastic simulation of networks of biochemical reactions

  2008cited by this paper
• Catabolic pathways and cellular responses of Pseudomonas putida P8 during growth on benzoate with a proteomics approach

  2008cited by this paper
• Genome-Wide Identification of H-NS-Controlled, Temperature-Regulated Genes in Escherichiacoli K-12

  2008cited by this paper
• Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

  2008cited by this paper
• Paradigm in biodegradation using Pseudomonas putida—A review of proteomics studies

  2008cited by this paper
• Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

  2008cited by this paper
• Induction of ortho- and meta-cleavage pathways in Pseudomonas in biodegradation of high benzoate concentration: MS identification of catabolic enzymes

  2008cited by this paper
• Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

  2008cited by this paper
• A Polyomic Approach To Elucidate the Fluoranthene-Degradative Pathway in Mycobacterium vanbaalenii PYR-1

  2007influential reference
• Functioning of the mercury resistance operon at extremely high Hg(II) loads in a chemostat: a proteome analysis.

  2007cited by this paper
• Escherichia coli enzyme IIANtr regulates the K+ transporter TrkA

  2007cited by this paper
• Gac/Rsm signal transduction pathway of γ‐proteobacteria: from RNA recognition to regulation of social behaviour

  2007cited by this paper
• The Pseudomonas putida Crc global regulator is an RNA binding protein that inhibits translation of the AlkS transcriptional regulator

  2007cited by this paper
• Identification of inducible protein complexes in the phenol degrader Pseudomonas sp. strain phDV1 by blue native gel electrophoresis and mass spectrometry

  2006cited by this paper
• The AauR-AauS Two-Component System Regulates Uptake and Metabolism of Acidic Amino Acids in Pseudomonas putida

  2006cited by this paper
• Translation initiation and the fate of bacterial mRNAs.

  2006cited by this paper
• Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2‐DE/MS and cleavable isotope‐coded affinity tag analysis

  2006cited by this paper
• Analysis of the proteome of Pseudomonas putida KT2440 grown on different sources of carbon and energy.

  2006cited by this paper
• Chemostat-based proteomic analysis of toluene-affected Pseudomonas putida S12.

  2006cited by this paper
• Transcriptional Tradeoff between Metabolic and Stress-response Programs in Pseudomonas putida KT2440 Cells Exposed to Toluene*

  2006cited by this paper
• Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites

  2006cited by this paper
• Complete and Integrated Pyrene Degradation Pathway in Mycobacterium vanbaalenii PYR-1 Based on Systems Biology

  2006cited by this paper
• Proteome Analysis of Cellular Response of Pseudomonas putida KT2440 to Tetracycline Stress

  2006cited by this paper
• Adaptation of Bacillus subtilis to growth at low temperature: a combined transcriptomic and proteomic appraisal.

  2006cited by this paper
• Proteomic Analysis Reveals the Participation of Energy- and Stress-Related Proteins in the Response of Pseudomonas putida DOT-T1E to Toluene

  2005cited by this paper
• Exposure to Cadmium Elevates Expression of Genes in the OxyR and OhrR Regulons and Induces Cross-Resistance to Peroxide Killing Treatment in Xanthomonas campestris

  2005cited by this paper
• Metals, toxicity and oxidative stress.

  2005cited by this paper
• A bacterial view of the periodic table: genes and proteins for toxic inorganic ions

  2005cited by this paper
• Lost in translation: the influence of ribosomes on bacterial mRNA decay.

  2005cited by this paper
• Biofilm formation of Pseudomonas putida IsoF: the role of quorum sensing as assessed by proteomics.

  2005cited by this paper
• Recent developments in bacterial cold-shock response.

  2004cited by this paper
• Genome-Wide Transcriptional Analysis of the Cold Shock Response in Wild-Type and Cold-Sensitive, Quadruple-csp-Deletion Strains of Escherichia coli

  2004cited by this paper
• Insights into Pseudomonas putida KT2440 response to phenol‐induced stress by quantitative proteomics

  2004cited by this paper
• Pseudomonas putida—a versatile biocatalyst

  2003cited by this paper
• Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert‐butyl ether in Pseudomonas putida KT2440

  2003cited by this paper
• Transcriptional and post-transcriptional control of cold-shock genes.

  2003cited by this paper
• Identification of Pseudomonas proteins coordinately induced by acidic amino acids and their amides: a two-dimensional electrophoresis study.

  2003cited by this paper
• Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis.

  2003cited by this paper
• Chaotropic solutes cause water stress in Pseudomonas putida.

  2003cited by this paper
• Cadmium is a mutagen that acts by inhibiting mismatch repair

  2003cited by this paper
• Mechanisms of solvent tolerance in gram-negative bacteria.

  2002cited by this paper
• Trehalose synthesis is induced upon exposure of Escherichia coli to cold and is essential for viability at low temperatures

  2002cited by this paper
• Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

  2002cited by this paper
• Identification and Characterization of an N-Acylhomoserine Lactone-Dependent Quorum-Sensing System in Pseudomonas putida Strain IsoF

  2002cited by this paper
• Acyl-Homoserine Lactone Production Is More Common among Plant-Associated Pseudomonas spp. than among Soilborne Pseudomonas spp

  2001cited by this paper
• Three Efflux Pumps Are Required To Provide Efficient Tolerance to Toluene in Pseudomonas putidaDOT-T1E

  2001cited by this paper
• Characterization of Phenotypic Changes inPseudomonas putida in Response to Surface-Associated Growth

  2001cited by this paper
• Evidence of Multiple Regulatory Functions for the PtsN (IIANtr) Protein of Pseudomonas putida

  2001cited by this paper
• Interactions of chromium with microorganisms and plants.

  2001cited by this paper
• The IIANtr (PtsN) Protein of Pseudomonas putida Mediates the C Source Inhibition of the ς54-dependent Pu Promoter of the TOL Plasmid*

  1999cited by this paper
• Isolation and transposon mutagenesis of a Pseudomonas putida KT2442 toluene-resistant variant: involvement of an efflux system in solvent resistance

  1998cited by this paper
• Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development

  1998cited by this paper
• Differentiation between cold shock proteins and cold acclimation proteins in a mesophilic gram-positive bacterium, Enterococcus faecalis JH2-2

  1997cited by this paper
• Active efflux of toluene in a solvent-resistant bacterium

  1996cited by this paper
• Cloning of a catabolite repression control (crc) gene from Pseudomonas aeruginosa, expression of the gene in Escherichia coli, and identification of the gene product in Pseudomonas aeruginosa

  1991cited by this paper

• Impact of flushing procedures on drinking water biostability and invasion susceptibility in distribution systems

  2025cites this paper
• Isolation, identification and the pathogenicity characterization of Pseudomonas putida 1C3 and its activation on immune responses in Japanese flounder (Paralichthys olivaceus).

  2025cites this paper
• Microbial interaction energy and EPS composition influenced ultrafiltration membrane biofouling and the role of UV pretreatment

  2023cites this paper
• Adaptive responses and metabolic strategies of Novosphingobium sp. ES2-1-17β-estradiol analyzed through integration of genomic and proteomic approaches.

  2023cites this paper
• In-depth genome and pan-genome analysis of a metal-resistant bacterium Pseudomonas parafulva OS-1

  2023cites this paper
• Algal extracellular organic matter pre-treatment enhances microalgal biofilm adhesion onto microporous substrate.

  2022cites this paper
• Impact of Tellurite on the Metabolism of Paenibacillus pabuli AL109b With Flagellin Production Explaining High Reduction Capacity

  2021cites this paper
• iTRAQ-Based Comparative Proteomic Analysis of Acinetobacter baylyi ADP1 Under DNA Damage in Relation to Different Carbon Sources

  2020cites this paper
• Essential Gene Clusters Identified in Stenotrophomonas MB339 for Multiple Metal/Antibiotic Resistance and Xenobiotic Degradation

  2018cites this paper
• CRISPR/Cas9-based Genome Editing in Pseudomonas aeruginosa and Cytidine Deaminase-Mediated Base Editing in Pseudomonas Species

  2018cites this paper
• Base-Catalyzed Depolymerization of Solid Lignin-Rich Streams Enables Microbial Conversion

  2017cites this paper
• Involvement of polyhydroxyalkanoates in stress resistance of microbial cells: Biotechnological consequences and applications.

  2017cites this paper
• iTRAQ-based quantitative proteomic analysis of the global response to 17β-estradiol in estrogen-degradation strain Pseudomonas putida SJTE-1

  2017cites this paper
• Title Base-Catalyzed Depolymerization of Solid Lignin-Rich Streams Enables Microbial Conversion Permalink

  2017cites this paper
• Systems and Synthetic Biology Approaches for Metabolic Engineering of Pseudomonas putida

  2016cites this paper
• Draft Genome Sequence of a Multi-Metal Resistant Bacterium Pseudomonas putida ATH-43 Isolated from Greenwich Island, Antarctica

  2016cites this paper
• Biosensor based on ion selective electrode for detection of L-arginine in fruit juices

  2015cites this paper
• Knockout of Extracytoplasmic Function Sigma Factor ECF-10 Affects Stress Resistance and Biofilm Formation in Pseudomonas putida KT2440

  2014cites this paper
• Knock-out of extracytoplasmic function sigma factor ECF-10 affects stress resistance 1 and biofilm formation in Pseudomonas putida KT 2440

  2014cites this paper
• The effect of cold stress on the proteome of the marine bacterium Pseudomonas fluorescens BA3SM1 and its ability to cope with metal excess.

  2014cites this paper
• Kinetic characterization of arginine deiminase and carbamate kinase from Streptococcus pyogenes M49.

  2013cites this paper