Use of RNA Secondary Structure for Studying the Evolution of RNase P and RNase MRP

No abstract is available for this paper.

• Publication year

  2000

• Venue

  Journal of Molecular Evolution

• Publication date

  2000-09-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1007/s002390010081PMID 11029064
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Molecular anatomy: Phyletic relationships derived from three-dimensional structures of proteins

  2005cited by this paper
• Structural and functional similarities between MRP and RNase P

  2004cited by this paper
• The RDP-II (Ribosomal Database Project)

  2001cited by this paper
• The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence.

  2000cited by this paper
• Phylogeny of the Restriction Endonuclease-Like Superfamily Inferred from Comparison of Protein Structures

  2000cited by this paper
• Metrics on RNA Secondary Structures

  2000cited by this paper
• The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes.

  1999influential reference
• The Root of the Tree of Life in the Light of the Covarion Model

  1999cited by this paper
• Early evolution: prokaryotes, the new kids on the block.

  1999cited by this paper
• The ribonuclease P database

  1998influential reference
• Relics from the RNA World

  1998influential reference
• Modeling the covarion hypothesis of nucleotide substitution.

  1998cited by this paper
• The Path from the RNA World

  1998cited by this paper
• A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages.

  1998cited by this paper
• Characterization of human mitochondrial RNase P: novel aspects in tRNA processing.

  1998cited by this paper
• SplitsTree: analyzing and visualizing evolutionary data

  1998cited by this paper
• Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP.

  1998cited by this paper
• The hydrogen hypothesis for the first eukaryote

  1998cited by this paper
• DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment

  1997cited by this paper
• A novel protein shared by RNase MRP and RNase P.

  1997influential reference
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

  1997cited by this paper
• Dissimilarity maps and substitution models

  1997cited by this paper
• SplitsTree-a program for analyzing and visualizing evolutionary data

  1997cited by this paper
• The RDP (Ribosomal Database Project)

  1997cited by this paper
• Pop3p is essential for the activity of the RNase MRP and RNase P ribonucleoproteins in vivo

  1997cited by this paper
• The origin of the eukaryotic cell.

  1996cited by this paper
• Structure and evolution of ribonuclease P RNA in Gram-positive bacteria.

  1996cited by this paper
• Multiple DNA and protein sequence alignment based on segment-to-segment comparison.

  1996cited by this paper
• TreeView: an application to display phylogenetic trees on personal computers

  1996cited by this paper
• Analyzing and Visualizing Sequence and Distance Data Using SplitsTree

  1996cited by this paper
• An RNase P RNA subunit mutation affects ribosomal RNA processing.

  1996cited by this paper
• Accurate Processing of a Eukaryotic Precursor Ribosomal RNA by Ribonuclease MRP in Vitro

  1996cited by this paper
• Association of RNase mitochondrial RNA processing enzyme with ribonuclease P in higher ordered structures in the nucleolus: a possible coordinate role in ribosome biogenesis.

  1996cited by this paper
• The evolution of the RNase P- and RNase MRP-associated RNAs: Phylogenetic analysis and nucleotide substitution rate

  1996cited by this paper
• Extraribosomal functions of ribosomal proteins.

  1996cited by this paper
• Birth of the snoRNPs: the evolution of RNase MRP and the eukaryotic pre-rRNA-processing system.

  1995influential reference
• Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme

  1995cited by this paper
• Pervasive migration of organellar DNA to the nucleus in plants

  1995cited by this paper
• Schizosaccharomyces pombe RNase MRP RNA is homologous to metazoan RNase MRP RNAs and may provide clues to interrelationships between RNase MRP and RNase P

  1995influential reference
• Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

  1994cited by this paper
• The Ribonuclease P Database

  1994cited by this paper
• Fast folding and comparison of RNA secondary structures

  1994cited by this paper
• Plant mitochondrial RNase P and E. coli RNase P have different substrate specificities.

  1993cited by this paper
• Comparative structural analysis of nuclear RNase P RNAs from yeast.

  1993cited by this paper
• Statistics of RNA secondary structures

  1993cited by this paper
• The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants

  1993cited by this paper
• Secondary structure of RNase MRP RNA as predicted by phylogenetic comparison

  1993cited by this paper
• RNase MRP/RNase P: a structure‐function relation conserved in evolution?

  1993cited by this paper
• RNase MRP and RNase P share a common substrate.

  1993cited by this paper
• Distributions of Tree Comparison Metrics—Some New Results

  1993cited by this paper
• 7‐2/MRP RNAs in plant and mammalian cells: association with higher order structures in the nucleolus.

  1992cited by this paper
• Comparing multiple RNA secondary structures using tree comparisons

  1990cited by this paper
• Similar cage-shaped structures for the RNA components of all ribonuclease P and ribonuclease MRP enzymes.

  1990influential reference
• Ribonuclease P: function and variation.

  1990cited by this paper
• On the Distribution of Lengths of Evolutionary Trees

  1990influential reference
• The relation between the divergence of sequence and structure in proteins.

  1986cited by this paper
• The origin of the eukaryotic cell.

  1984cited by this paper
• Comparing Trees with Pendant Vertices Labelled

  1984influential reference

• Agency in evolution of biomolecular communication

  2023cites this paper
• Menzerath–Altmann’s Law of Syntax in RNA Accretion History

  2021cites this paper
• Computing the origin and evolution of the ribosome from its structure — Uncovering processes of macromolecular accretion benefiting synthetic biology

  2015cites this paper
• Use of gaseous ozone to prevent post-harvest microbial spoilage of leafy produce

  2015cites this paper
• Deep metazoan phylogeny : the backbone of the tree of life : new insights from analyses of molecules, morphology, and theory of data analysis

  2014cites this paper
• Archaea: The First Domain of Diversified Life

  2014cites this paper
• The Case for an Early Biological Origin of DNA

  2014cites this paper
• Comparative Analysis of RNA Families Reveals Distinct Repertoires for Each Domain of Life

  2012cites this paper
• What an rRNA Secondary Structure Tells about Phylogeny of Fungi in Ascomycota with Emphasis on Evolution of Major Types of Ascus

  2012cites this paper
• Crosslinking studies of the bacterial RNase P holoenzyme and functional characterisation of the novel protein-only RNase P from Arabidopsis thaliana

  2012cites this paper
• Effects of rRNA secondary structure on topological accuracy: a case study based on fungal 18S rRNAs

  2011cites this paper
• RNA interactions.

  2011cites this paper
• Mutational Patterns in RNA Secondary Structure Evolution Examined in Three RNA Families

  2011cites this paper
• Phylogenetic Utility of RNA Structure: Evolution's Arrow and Emergence of Early Biochemistry and Diversified Life

  2010cites this paper
• The ancient history of the structure of ribonuclease P and the early origins of Archaea

  2010influential citation
• Conservative secondary structure motif of streptavidin-binding aptamers generated by different laboratories.

  2010cites this paper
• Accurate and efficient reconstruction of deep phylogenies from structured RNAs

  2009cites this paper
• Efficient coding in dolphin surface behavioral patterns

  2009cites this paper
• The evolutionary significance of the long variable arm in transfer RNA

  2009cites this paper
• Comparing RNA secondary structures based on 2D graphical representation

  2008cites this paper
• List of Contributing Authors

  2008cites this paper
• Use of statistical measures for analyzing RNA secondary structures

  2008cites this paper
• An analysis of structural influences on selection in RNA genes.

  2008cites this paper
• NOBAI: a web server for character coding of geometrical and statistical features in RNA structure

  2008cites this paper
• Strategies for measuring evolutionary conservation of RNA secondary structures

  2008cites this paper
• Evolutionary Patterns in the Sequence and Structure of Transfer RNA: A Window into Early Translation and the Genetic Code

  2008cites this paper
• Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses

  2008cites this paper
• Evolutionary Genomics: Linking Macromolecular Structure, Genomes and Biological Networks

  2008cites this paper
• NON-CODING RNAs

  2008cites this paper
• Origins and evolution of modern biochemistry: insights from genomes and molecular structure.

  2008cites this paper
• Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis

  2007cites this paper
• The Evolution of Eukaryotes

  2007cites this paper
• The Origin and Evolution of tRNA Inferred from Phylogenetic Analysis of Structure

  2007cites this paper
• RNase MRP and the RNA processing cascade in the eukaryotic ancestor

  2007influential citation
• Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture

  2007cites this paper
• Human RNase MRP complexes: The Rpp25-Rpp20 dimer makes the difference

  2007influential citation
• A method for rapid similarity analysis of RNA secondary structures

  2006cites this paper
• Heterodimerization regulates RNase MRP/RNase P association, localization, and expression of Rpp20 and Rpp25.

  2006cites this paper
• Sequence analysis of RNase MRP RNA reveals its origination from eukaryotic RNase P RNA.

  2006cites this paper
• Ribonuclease P: The Evolution of an Ancient RNA Enzyme

  2006cites this paper
• A hexapod nuclear SSU rRNA secondary-structure model and catalog of taxon-specific structural variation.

  2006cites this paper
• RNA Secondary Structures

  2006cites this paper
• Structure-based methods for the phylogenetic analysis of ribosomal RNA molecules

  2005cites this paper
• Evolutionary patterns of non-coding RNAs

  2005cites this paper
• A secondary structural model of the 28S rRNA expansion segments D2 and D3 for Chalcidoid wasps (Hymenoptera: Chalcidoidea).

  2005cites this paper
• Secondary structure probing of the human RNase MRP RNA reveals the potential for MRP RNA subsets.

  2005cites this paper
• Searching for ncRNAs in eukaryotic genomes: Maximizing biological input with RNAmotif

  2004cites this paper
• Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs

  2004cites this paper
• Lost in the RNA world : non-coding RNA and the spliceosome in the eukaryotic ancestor : a thesis presented in partial fulfilment of the requirements for the degree of PhD in Bioinformatics at Massey University, Palmerston North, New Zealand

  2004cites this paper
• Comparaison de structures secondaires d'ARN

  2004cites this paper
• Characterizing regions of ambiguous alignment caused by the expansion and contraction of hairpin-stem loops in ribosomal RNA molecules.

  2004cites this paper
• Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex.

  2004cites this paper
• A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera: Chrysomelidae; Galerucinae)

  2004cites this paper
• Structural rRNA characters support monophyly of raptorial limbs and paraphyly of limb specialization in water fleas

  2003cites this paper
• The enigma of ribonuclease P evolution.

  2003cites this paper
• Using ancestral sequences to uncover potential gene homologues.

  2003cites this paper
• Mitochondrial RNase P RNAs in ascomycete fungi: lineage-specific variations in RNA secondary structure.

  2003cites this paper
• Consensus Algorithms for Trees and Strings

  2003cites this paper
• A Search for H/ACA SnoRNAs in Yeast Using MFE Secondary Structure Prediction

  2003cites this paper
• A structural and functional study of plastid RNAs homologous to catalytic bacterial RNase P RNA.

  2003cites this paper
• Comparative analysis of mt LSU rRNA secondary structures of Odonates: structural variability and phylogenetic signal

  2003cites this paper
• Testing fundamental evolutionary hypotheses.

  2003cites this paper
• The human RNase MRP complex : composition, assembly and role in human disease

  2002cites this paper
• Reconstructing phylogeny from RNA secondary structure via simulated evolution

  2002cites this paper
• Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes.

  2002cites this paper
• Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA.

  2002cites this paper
• Tracing the evolution of RNA structure in ribosomes.

  2002cites this paper
• Louse (Insecta: Phthiraptera) mitochondrial 12S rRNA secondary structure is highly variable

  2002cites this paper
• Mathematical Elegance with Biochemical Realism: The Covarion Model of Molecular Evolution

  2001cites this paper
• hPop5, a Protein Subunit of the Human RNase MRP and RNase P Endoribonucleases*

  2001cites this paper
• Metrics on RNA Secondary Structures

  2000cites this paper
• Varieties of RNase P: a nomenclature problem?

  2000cites this paper