Bioinformatics Analysis of PTM-Modified Protein Interaction Networks and Complexes.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Methods in molecular biology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Chemistry, Computer Science

• Identifiers
  DOI 10.1007/978-1-4939-6783-4_15PMID 28150245
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.

  2016cited by this paper
• The Roles of Post-translational Modifications in the Context of Protein Interaction Networks

  2015cited by this paper
• Structural Analysis of PTM Hotspots (SAPH-ire) – A Quantitative Informatics Method Enabling the Discovery of Novel Regulatory Elements in Protein Families

  2015cited by this paper
• The BioPlex Network: A Systematic Exploration of the Human Interactome.

  2015cited by this paper
• Widespread macromolecular interaction perturbations in human genetic disorders.

  2015cited by this paper
• Systematic Analysis and Prediction of In Situ Cross Talk of O-GlcNAcylation and Phosphorylation

  2015cited by this paper
• Panorama of ancient metazoan macromolecular complexes

  2015cited by this paper
• A human interactome in three quantitative dimensions organized by stoichiometries and abundances.

  2015cited by this paper
• Fundamentals of protein interaction network mapping

  2015cited by this paper
• Systematic Characterization and Prediction of Post-Translational Modification Cross-Talk*

  2015cited by this paper
• Phospho-tyrosine dependent protein–protein interaction network

  2015cited by this paper
• Recent findings and technological advances in phosphoproteomics for cells and tissues

  2015cited by this paper
• Studying post-translational modifications with protein interaction networks.

  2014cited by this paper
• A proteome-scale map of the human interactome network.

  2014cited by this paper
• Combining genetic perturbations and proteomics to examine kinase-phosphatase networks in Drosophila embryos.

  2014cited by this paper
• The BioGRID interaction database: 2015 update

  2014cited by this paper
• Identification of enriched PTM crosstalk motifs from large-scale experimental data sets.

  2014cited by this paper
• A web of possibilities: network-based discovery of protein interaction codes.

  2014cited by this paper
• The structural and functional signatures of proteins that undergo multiple events of post‐translational modification

  2014cited by this paper
• A Massively Parallel Pipeline to Clone DNA Variants and Examine Molecular Phenotypes of Human Disease Mutations

  2014cited by this paper
• Protein Complex–Based Analysis Framework for High-Throughput Data Sets

  2013cited by this paper
• Dual Coordination of Post Translational Modifications in Human Protein Networks

  2013cited by this paper
• Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS

  2013cited by this paper
• The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data

  2013cited by this paper
• Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

  2013cited by this paper
• The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

  2013cited by this paper
• A Y2H-seq approach defines the human protein methyltransferase interactome

  2013cited by this paper
• Molecular interaction networks in the analyses of sequence variation and proteomics data

  2013cited by this paper
• Deciphering post‐translational modification codes

  2013cited by this paper
• HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores

  2012cited by this paper
• The ConsensusPathDB interaction database: 2013 update

  2012cited by this paper
• Systematic functional prioritization of protein posttranslational modifications.

  2012cited by this paper
• HINT: High-quality protein interactomes and their applications in understanding human disease

  2012cited by this paper
• Deciphering a global network of functionally associated post-translational modifications

  2012cited by this paper
• PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

  2011cited by this paper
• Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database

  2011cited by this paper
• System-Wide Temporal Characterization of the Proteome and Phosphoproteome of Human Embryonic Stem Cell Differentiation

  2011cited by this paper
• Leveraging the power of next-generation sequencing to generate interactome datasets

  2011cited by this paper
• Interactome networks and human disease.

  2011cited by this paper
• Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

  2010cited by this paper
• DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila

  2010cited by this paper
• Will the ubiquitin system furnish as many drug targets as protein kinases?

  2010cited by this paper
• Targeting cancer with small molecule kinase inhibitors

  2009cited by this paper
• NetworkBLAST: comparative analysis of protein networks

  2008cited by this paper
• An empirical framework for binary interactome mapping

  2008cited by this paper
• CFinder: locating cliques and overlapping modules in biological networks

  2006cited by this paper
• Data and text mining CFinder : locating cliques and overlapping modules in biological networks

  2006cited by this paper
• Interactome Networks and Human Disease

  year unknowncited by this paper

• OncoProExp: An interactive shiny web application for comprehensive cancer proteomics and phosphoproteomics analysis

  2025cites this paper
• Translational proteomics and phosphoproteomics: Tissue to extracellular vesicles.

  2023cites this paper
• A decade of Nucleic Acid Programmable Protein Arrays (NAPPA) availability: News, actors, progress, prospects and access.

  2019cites this paper
• Disease gene classification with metagraph representations.

  2017cites this paper