Tissue-specific proteins and functional implications.

No abstract is available for this paper.

• Publication year

  2011

• Venue

  Journal of Proteome Research

• Publication date

  2011-02-22

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1021/pr101132hPMID 21341747
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Measuring and analyzing tissue specificity of human genes and protein complexes

  2011cited by this paper
• Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

  2010cited by this paper
• Correlation of mRNA and protein in complex biological samples

  2009cited by this paper
• An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

  2009cited by this paper
• Tissue specificity and the human protein interaction network

  2009cited by this paper
• Definition, conservation and epigenetics of housekeeping and tissue-enriched genes

  2009cited by this paper
• BioMart – biological queries made easy

  2009cited by this paper
• MDA-MB-435 and M14 cell lines: identical but not M14 melanoma?

  2009cited by this paper
• Mapping and quantifying mammalian transcriptomes by RNA-Seq

  2008cited by this paper
• An empirical framework for binary interactome mapping

  2008cited by this paper
• BMC Bioinformatics BioMed Central

  2008cited by this paper
• A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes

  2008cited by this paper
• Ensembl 2009

  2008cited by this paper
• Alternative Isoform Regulation in Human Tissue Transcriptomes

  2008cited by this paper
• How many human genes can be defined as housekeeping with current expression data?

  2008cited by this paper
• The Pfam protein families database

  2007cited by this paper
• Quantitating tissue specificity of human genes to facilitate biomarker discovery

  2007cited by this paper
• CORUM: the comprehensive resource of mammalian protein complexes

  2007cited by this paper
• Drug—target network

  2007cited by this paper
• Housekeeping genes tend to show reduced upstream sequence conservation

  2007cited by this paper
• Further understanding human disease genes by comparing with housekeeping genes and other genes

  2006cited by this paper
• Proteome survey reveals modularity of the yeast cell machinery

  2006cited by this paper
• Structurally and functionally unique complexins at retinal ribbon synapses

  2005cited by this paper
• Dynamic Complex Formation During the Yeast Cell Cycle

  2005cited by this paper
• A gene atlas of the mouse and human protein-encoding transcriptomes.

  2004cited by this paper
• Protein domains enriched in mammalian tissue-specific or widely expressed genes.

  2004cited by this paper
• Human housekeeping genes are compact.

  2003cited by this paper
• Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1.

  2003cited by this paper
• Elevated rates of protein secretion, evolution, and disease among tissue-specific genes.

  2003cited by this paper
• Temporal regulation of a paired-like homeodomain repressor/TLE corepressor complex and a related activator is required for pituitary organogenesis.

  2001cited by this paper
• The Protein Data Bank

  2000cited by this paper
• Inhibition of Stat1-mediated gene activation by PIAS1.

  1998cited by this paper
• Electronic Reprint Biological Crystallography the Protein Data Bank Biological Crystallography the Protein Data Bank

  year unknowncited by this paper
• Bioinformatics Original Paper Improved Scoring of Functional Groups from Gene Expression Data by Decorrelating Go Graph Structure

  year unknowncited by this paper

• Refined ChIP‐Seq Protocol for High‐Quality Chromatin Profiling in Solid Tissues Using the Complete Genomics/MGI Sequencing Platform

  2025cites this paper
• The FunCoup Cytoscape App: multi-species network analysis and visualization

  2024cites this paper
• MACSPI enables tissue-selective proteomic and interactomic analyses in multicellular organisms

  2024cites this paper
• LP30K protein manifested in hemocytes of Bombyx mori larva on Nosema bombycis infection and showed functional evolution based on glucose- binding domain

  2023cites this paper
• A Post-GWAS Functional Analysis Confirming Effects of Three BTA13 Genes CACNB2, SLC39A12, and ZEB1 on Dairy Cattle Reproduction

  2022cites this paper
• EEF1D facilitates milk lipid synthesis by regulation of PI3K‐Akt signaling in mammals

  2021cites this paper
• Multifaceted Design and Emerging Applications of Tissue Adhesives

  2021cites this paper
• Functional orderly topography of brain networks associated with gene expression heterogeneity

  2021cites this paper
• Overcoming barriers confronting application of protein therapeutics in bone fracture healing

  2020cites this paper
• Mechanisms of tissue and cell-type specificity in heritable traits and diseases

  2020cites this paper
• Estrogen receptor profiles across tissues from male and female Rattus norvegicus

  2019cites this paper
• The interpretation of gene coexpression in systems biology : [supplementary material]

  2019cites this paper
• Tissue-specific genes as an underutilized resource in drug discovery

  2018cites this paper
• When few survive to tell the tale: thymus and gonad as auditioning organs: historical overview

  2018cites this paper
• МЕТОДОЛОГИЧЕСКИЕ АСПЕКТЫ ИДЕНТИФИКАЦИИ ТКАНЕСПЕЦИФИЧНЫХ БЕЛКОВ И ПЕПТИДОВ, ФОРМИРУЮЩИХ КОРРИГИРУЮЩИЕ СВОЙСТВА ИННОВАЦИОННЫХ МЯСНЫХ ПРОДУКТОВ

  2018cites this paper
• METHODOLOGICAL ASPECTS OF IDENTIFICATION OF TISSUE-SPECIFIC PROTEINS AND PEPTIDES FORMING THE CORRECTIVE PROPERTIES OF INNOVATIVE MEAT PRODUCTS

  2018cites this paper
• Protein Interaction Networks in Health and Disease

  2016cites this paper
• Exploring the evolutionary rate differences between human disease and non-disease genes.

  2016cites this paper
• Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks

  2016cites this paper
• Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

  2015cites this paper
• SPECTRA: An Integrated Knowledge Base for Comparing Tissue and Tumor-Specific PPI Networks in Human

  2015influential citation
• Human protein interaction networks across tissues and diseases

  2015cites this paper
• Novel bioinformatic identification of differentially expressed tissue-specific and cancer-related proteins from the Human Protein Atlas for biomarker discovery.

  2015cites this paper
• Comprehensive comparison of large-scale tissue expression datasets

  2015cites this paper
• A Gibbs sampling strategy for mining of protein-protein interaction networks and protein structures

  2015influential citation
• Integrating the interactome and the transcriptome of Drosophila

  2014influential citation
• Analysis of human tissue-specific protein-protein interaction networks

  2014influential citation
• Integration, visualization and analysis of human interactome.

  2014cites this paper
• Construction and Analyses of Human Large-Scale Tissue Specific Networks

  2014cites this paper
• Prediction of disease genes using tissue-specified gene-gene network

  2014cites this paper
• Comparative Analysis of Human Tissue Interactomes Reveals Factors Leading to Tissue-Specific Manifestation of Hereditary Diseases

  2014cites this paper
• Integration of Protein Abundance and Structure Data Reveals Competition in the ErbB Signaling Network

  2013cites this paper
• Alternative splicing and protein interaction data sets

  2013cites this paper
• Global versus local hubs in human protein-protein interaction network.

  2013cites this paper
• The Drosophila Interactions Database: Integrating The Interactome And Transcriptome

  2013influential citation
• [Perspectives of RNA interference application in the therapy of diseases associated with defects in alternative RNA splicing].

  2012cites this paper
• The role of miRNAs in complex formation and control

  2012cites this paper
• Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks

  2012cites this paper
• Novel analysis approaches to context-dependent molecular networks

  2011cites this paper
• Enhancing the prioritization of disease- causing genes through tissue-specific protein- protein interaction networks

  2011cites this paper
• Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation[W][OA]

  2011cites this paper