MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data

No abstract is available for this paper.

• Publication year

  2017

• Venue

  PeerJ Preprints

• Publication date

  2017-02-21

• Fields of study

  Biology, Computer Science, Environmental Science

• Identifiers
  DOI 10.7287/PEERJ.PREPRINTS.2825V1
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes

  2016cited by this paper
• The past, present and future of microbiome analyses

  2016cited by this paper
• MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

  2016cited by this paper
• MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation

  2016cited by this paper
• Assessing the performance of the Oxford Nanopore Technologies MinION

  2015cited by this paper
• An evaluation of the accuracy and speed of metagenome analysis tools

  2015cited by this paper
• SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

  2015cited by this paper
• MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

  2014cited by this paper
• Tackling soil diversity with the assembly of large, complex metagenomes

  2014cited by this paper
• Trimmomatic: a flexible trimmer for Illumina sequence data

  2014cited by this paper
• These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure

  2013cited by this paper
• Gene and translation initiation site prediction in metagenomic sequences

  2012cited by this paper
• Comparison of metagenomic samples using sequence signatures

  2012cited by this paper

• Decoding the DNA and RNA viromes of a tropical urban lagoon.

  2023cites this paper
• Coevolution of the Ess1-CTD axis in polar fungi suggests a role for phase separation in cold tolerance

  2022cites this paper
• MerCat2: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from omics data

  2022cites this paper
• A High Rate Algal Pond Hosting a Dynamic Community of RNA Viruses

  2021cites this paper
• Amino Acid k-mer Feature Extraction for Quantitative Antimicrobial Resistance (AMR) Prediction by Machine Learning and Model Interpretation for Biological Insights

  2020cites this paper
• ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data

  2017cites this paper
• From data to knowledge: The future of multi-omics data analysis for the rhizosphere

  2017cites this paper