Paenibacillus sp. Strain JDR-2 and XynA1: a Novel System for Methylglucuronoxylan Utilization

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Applied and Environmental Microbiology

• Publication date

  2006-02-01

• Fields of study

  Biology, Medicine, Chemistry, Environmental Science

• Identifiers
  DOI 10.1128/AEM.72.2.1496-1506.2006PMID 16461704PMCID PMC1392964
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The Pfam protein families database

  2007cited by this paper
• Energy: China's burning ambition

  2005cited by this paper
• Functions of Family-22 Carbohydrate-Binding Module in Clostridium thermocellum Xyn10C

  2005cited by this paper
• Cellulosomes: plant-cell-wall-degrading enzyme complexes

  2004cited by this paper
• MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

  2004cited by this paper
• The Mechanisms by Which Family 10 Glycoside Hydrolases Bind Decorated Substrates*

  2004cited by this paper
• Binding to pyruvylated compounds as an ancestral mechanism to anchor the outer envelope in primitive bacteria

  2004cited by this paper
• Improved prediction of signal peptides: SignalP 3.0.

  2004cited by this paper
• Structural and Biochemical Analysis of Cellvibrio japonicus Xylanase 10C

  2004cited by this paper
• The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides.

  2004cited by this paper
• Isolation and Expression of the xynB Gene and Its Product, XynB, a Consistent Component of the Clostridium cellulovorans Cellulosome

  2004cited by this paper
• Saccharomyces cerevisiae Engineered for Xylose Metabolism Exhibits a Respiratory Response

  2004cited by this paper
• Metabolic engineering for improved fermentation of pentoses by yeasts

  2004cited by this paper
• Essential role of the family‐22 carbohydrate‐binding modules for β‐1,3‐1,4‐glucanase activity of Clostridium stercorarium Xyn10B

  2004cited by this paper
• The N-terminal family 22 carbohydrate-binding module of xylanase 10B of Clostridium themocellum is not a thermostabilizing domain.

  2004cited by this paper
• Crystal Structures of Decorated Xylooligosaccharides Bound to a Family 10 Xylanase from Streptomyces olivaceoviridis E-86*

  2004cited by this paper
• The Pfam protein families database

  2004cited by this paper
• Microbial Strategies for the Depolymerization of Glucuronoxylan: Leads to Biotechnological Applications of Endoxylanases

  2003cited by this paper
• Cloning, Expression, and Cell Surface Localization of Paenibacillus sp. Strain W-61 Xylanase 5, a Multidomain Xylanase

  2003cited by this paper
• CDD: a curated Entrez database of conserved domain alignments

  2003cited by this paper
• Cellulosomes from Mesophilic Bacteria

  2003cited by this paper
• Bacteria engineered for fuel ethanol production: current status

  2003cited by this paper
• Functional Replacement of the Escherichia colid-(−)-Lactate Dehydrogenase Gene (ldhA) with the l-(+)-Lactate Dehydrogenase Gene (ldhL) from Pediococcus acidilactici

  2003cited by this paper
• Environmental quantification of Pasteuria penetrans endospores using in situ antigen extraction and immunodetection with a monoclonal antibody.

  2003cited by this paper
• Production of Optically Pure d-Lactic Acid in Mineral Salts Medium by Metabolically Engineered Escherichia coli W3110

  2003cited by this paper
• Applications of enzymes to lignocellulosics

  2003cited by this paper
• Thermomyces lanuginosus: properties of strains and their hemicellulases.

  2003cited by this paper
• Fermentation of sugar mixtures using Escherichia coli catabolite repression mutants engineered for production of L-lactic acid

  2002cited by this paper
• The structural basis for catalysis and specificity of the Pseudomonas cellulosa alpha-glucuronidase, GlcA67A.

  2002cited by this paper
• The Membrane-Bound α-Glucuronidase from Pseudomonas cellulosa Hydrolyzes 4-O-Methyl-d-Glucuronoxylooligosaccharides but Not 4-O-Methyl-d-Glucuronoxylan

  2002cited by this paper
• Cell-Surface-Anchoring Role of N-Terminal Surface Layer Homology Domains of Clostridium cellulovorans EngE

  2002cited by this paper
• Hydrolysis of lignocellulosic materials for ethanol production: a review.

  2002cited by this paper
• Binding specificity and thermodynamics of a family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A.

  2001cited by this paper
• Clostridium thermocellum Xyn10B carbohydrate-binding module 22-2: the role of conserved amino acids in ligand binding.

  2001cited by this paper
• Functional Characterization of a Novel Xylanase from a Corn Strain of Erwinia chrysanthemi

  2001cited by this paper
• Crystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms.

  2001cited by this paper
• Molecular Cloning: A Laboratory Manual

  2001cited by this paper
• Characterization of Xylanolytic Enzymes in Clostridium cellulovorans: Expression of Xylanase Activity Dependent on Growth Substrates

  2001cited by this paper
• Importance of the Carbohydrate-Binding Module of Clostridium stercorarium Xyn10B to Xylan Hydrolysis

  2001cited by this paper
• Purification and Some Properties of High-molecular-weight Xylanases, the Xylanases 4 and 5 of Aeromonas caviae W-61

  2000cited by this paper
• The X6 "thermostabilizing" domains of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domain.

  2000cited by this paper
• The thermostabilizing domain of the modular xylanase XynA of Thermotoga maritima represents a novel type of binding domain with affinity for soluble xylan and mixed‐linkage β‐1,3/β‐1,4‐glucan

  2000cited by this paper
• Bacterial SLH domain proteins are non‐covalently anchored to the cell surface via a conserved mechanism involving wall polysaccharide pyruvylation

  2000cited by this paper
• Enteric Bacterial Catalysts for Fuel Ethanol Production

  1999cited by this paper
• The Glucuronic Acid Utilization Gene Cluster from Bacillus stearothermophilus T-6

  1999cited by this paper
• CAP3: A DNA sequence assembly program.

  1999cited by this paper
• Molecular and Biochemical Characterization of Two Xylanase-Encoding Genes from Cellulomonas pachnodae

  1999cited by this paper
• (4-O-Methyl-α-d-glucurono)-d-xylan from Rudbeckia fulgida, var. sullivantii (Boynton et Beadle)

  1998cited by this paper
• The Topology of the Substrate Binding Clefts of Glycosyl Hydrolase Family 10 Xylanases Are Not Conserved*

  1998cited by this paper
• (4-O-Methyl-alpha-D-glucurono)-D-xylan from Rudbeckia fulgida, var. sullivantii (Boynton et Beadle).

  1998cited by this paper
• Antibodies from Chicken Eggs as Probes for Antigens from Pasteuria penetrans Endospores.

  1997cited by this paper
• Endo-β-1,4-xylanase families: differences in catalytic properties

  1997cited by this paper
• Characterization and subcellular localization of the Clostridium thermocellum scaffoldin dockerin binding protein SdbA

  1997cited by this paper
• Key Residues in Subsite F Play a Critical Role in the Activity of Pseudomonas fluorescens Subspecies cellulosa Xylanase A Against Xylooligosaccharides but Not Against Highly Polymeric Substrates such as Xylan*

  1997cited by this paper
• Endo-beta-1,4-xylanase families: differences in catalytic properties.

  1997cited by this paper
• Structural and sequence-based classification of glycoside hydrolases.

  1997cited by this paper
• A modular xylanase from mesophilic Cellulomonas fimi contains the same cellulose-binding and thermostabilizing domains as xylanases from thermophilic bacteria.

  1996cited by this paper
• Characterization of the Bacillus anthracis S-layer: cloning and sequencing of the structural gene

  1995cited by this paper
• Purification and properties of an endoxylanase from a corn stalk rot strain of Erwinia chrysanthemi

  1993cited by this paper
• New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

  1993cited by this paper
• Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families.

  1991cited by this paper
• Purification and Properties of beta-1, 4-Xylanase from Aeromonas caviae W-61.

  1991cited by this paper
• Purification and Properties of β-1, 4-Xylanase from Aeromonas caviae W-61

  1991cited by this paper
• Cloning and sequencing of the gene encoding a 125-kilodalton surface-layer protein from Bacillus sphaericus 2362 and of a related cryptic gene

  1989cited by this paper
• Improvements in the isolation of IgY from the yolks of eggs laid by immunized hens.

  1985cited by this paper
• Isolation and Characterization of an Anaerobic, Cellulolytic Bacterium, Clostridium cellulovorans sp. nov

  1984cited by this paper
• N-(1-naphthyl)ethylenediamine dihydrochloride as a new reagent for nanomole quantification of sugars on thin-layer plates by a mathematical calibration process.

  1980cited by this paper
• A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

  1976cited by this paper
• Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

  1970cited by this paper
• Regulation of Pectate Lyase Synthesis in Pseudomonas fluorescens and Erwinia carotovora

  1970influential reference
• CONSTITUTION OF A 4-O-METHYLGLUCURONOXYLAN FROM THE WOOD OF TREMBLING ASPEN (POPULUS TREMULOIDES MICHX.)

  1961cited by this paper
• COLORIMETRIC METHOD FOR DETER-MINATION OF SUGAR AND RELATED SUBSTANCE

  1956cited by this paper
• A Colorimetric Method for the Determination of Sugars

  1951cited by this paper
• A PHOTOMETRIC ADAPTATION OF THE SOMOGYI METHOD FOR THE DETERMINATION OF GLUCOSE

  1944cited by this paper

• Production of a bacterial secretome highly efficient for the deconstruction of xylans

  2024cites this paper
• Paenibacillus hexagrammi sp. nov., a novel bacterium isolated from the gut content of Hexagrammos agrammus.

  2024cites this paper
• Alkali treatment of maize bran affects utilization of arabinoxylan and other non-digestible carbohydrates by the human gut microbiota in vitro in a dose-dependent manner

  2024cites this paper
• Characterization and in-depth genome analysis of a halotolerant probiotic bacterium Paenibacillus sp. S-12, a multifarious bacterium isolated from Rauvolfia serpentina

  2023cites this paper
• Enzymatic systems for carbohydrate utilization and biosynthesis in Xanthomonas and their role in pathogenesis and tissue specificity.

  2023cites this paper
• A New Subfamily of Glycoside Hydrolase Family 30 with Strict Xylobiohydrolase Function

  2021cites this paper
• Bacterial xylan utilization regulons: Systems for coupling depolymerization of methylglucuronoxylans with assimilation and metabolism.

  2021cites this paper
• CaXyn30B from the solventogenic bacterium Clostridium acetobutylicum is a glucuronic acid-dependent endoxylanase

  2020influential citation
• Functional genomics assessment of lytic polysaccharide mono-oxygenase with glycoside hydrolases in Paenibacillus dendritiformis CRN18.

  2020cites this paper
• Insights into the hydrolysis of Eucalyptus dunnii bark by xylanolytic extracts of Pseudozyma sp.

  2020cites this paper
• Comparative genomic analysis reveals metabolic diversity of different Paenibacillus groups

  2020cites this paper
• Characterization and functional analysis of two novel thermotolerant α-l-arabinofuranosidases belonging to glycoside hydrolase family 51 from Thielavia terrestris and family 62 from Eupenicillium parvum

  2020cites this paper
• The extracellular endo-β-1,4-xylanase with multidomain from the extreme thermophile Caldicellulosiruptor lactoaceticus is specific for insoluble xylan degradation

  2019cites this paper
• Chapter 2 Occurrence , Structure , Chemistry , Genetics , Morphogenesis , and Functions of SLayers

  2018cites this paper
• Biochemical characterization of a novel xylanase from Paenibacillus barengoltzii and its application in xylooligosaccharides production from corncobs.

  2018cites this paper
• A PCR-Based Method for Distinguishing between Two Common Beehive Bacteria, Paenibacillus larvae and Brevibacillus laterosporus

  2018cites this paper
• Paenibacillus sp. A59 GH10 and GH11 Extracellular Endoxylanases: Application in Biomass Bioconversion

  2018cites this paper
• A Novel Multi-domain High Molecular, Salt-Stable Alkaline Xylanase from Alkalibacterium sp. SL3

  2017cites this paper
• Paenibacillus albidus sp. nov., isolated from grassland soil.

  2017cites this paper
• GH115 α-glucuronidase and GH11 xylanase from Paenibacillus sp. JDR-2: potential roles in processing glucuronoxylans

  2017cites this paper
• Comparative genomic analysis of Paenibacillus sp. SSG-1 and its closely related strains reveals the effect of glycometabolism on environmental adaptation

  2017cites this paper
• A GH115 α-glucuronidase from Schizophyllum commune contributes to the synergistic enzymatic deconstruction of softwood glucuronoarabinoxylan

  2016cites this paper
• Enzymatic characterization of Paenibacillus amylolyticus xylanases GH10 and GH30 for xylan hydrolysis

  2016cites this paper
• Identification of a novel cellulose-binding domain within the endo-β-1,4-xylanase KRICT PX-3 from Paenibacillus terrae HPL-003.

  2016cites this paper
• A 1,3-1,4-β-Glucan Utilization Regulon in Paenibacillus sp. Strain JDR-2

  2016cites this paper
• Prokaryotic Cell Wall Compounds-ReadingSample

  2016cites this paper
• Genomic and transcriptomic analysis of carbohydrate utilization by Paenibacillus sp. JDR-2: systems for bioprocessing plant polysaccharides

  2016influential citation
• A high-molecular-weight, alkaline, and thermostable β-1,4-xylanase of a subseafloor Microcella alkaliphila

  2016cites this paper
• Xylanase 30 A from Clostridium thermocellum functions as a glucuronoxylan xylanohydrolase

  2016cites this paper
• Multidomain, Surface Layer-associated Glycoside Hydrolases Contribute to Plant Polysaccharide Degradation by Caldicellulosiruptor Species*

  2016cites this paper
• Metabolic potential of Bacillus subtilis 168 for the direct conversion of xylans to fermentation products

  2015cites this paper
• Advancing Phage Genomics and Honeybee Health Through Discovery and Characterization of Paenibacillaceae Bacteriophages

  2015cites this paper
• Xylan Utilization Regulon in Xanthomonas citri pv. citri Strain 306: Gene Expression and Utilization of Oligoxylosides

  2015cites this paper
• The effect of chronic gamma ray irradiation on lignocellulose of Brachypodium distachyon

  2015cites this paper
• Comprehensive Bioinformatic Analysis of Glycoside Hydrolase Family 10 Proteins

  2015cites this paper
• A new bi-modular endo-β-1,4-xylanase KRICT PX-3 from whole genome sequence of Paenibacillus terrae HPL-003.

  2014cites this paper
• Paenibacillus relictisesami sp. nov., isolated from sesame oil cake.

  2014cites this paper
• Transcriptomic Analysis of Xylan Utilization Systems in Paenibacillus sp. Strain JDR-2

  2014cites this paper
• Isolation and identification of Paenibacillus sp. FM-6, involved in the biotransformation of albendazole

  2014cites this paper
• GH51 Arabinofuranosidase and Its Role in the Methylglucuronoarabinoxylan Utilization System in Paenibacillus sp. Strain JDR-2

  2014cites this paper
• Structural and Biochemical Basis for Mannan Utilization by Caldanaerobius polysaccharolyticus Strain ATCC BAA-17*

  2014cites this paper
• Cloning and characterization of a multidomain GH10 xylanase from Paenibacillus sp. DG-22.

  2014cites this paper
• jmbReview Cloning and Characterization of a Multidomain GH 10 Xylanase from Paenibacillus sp . DG-22

  2014cites this paper
• Engineering the Xylan Utilization System in Bacillus subtilis for Production of Acidic Xylooligosaccharides

  2013cites this paper
• Molecular and biochemical characterization of a new alkaline active multidomain xylanase from alkaline wastewater sludge

  2013cites this paper
• Cloning and Characterization of Xylanase Gene from Paenibacillus woosongensis

  2012influential citation
• Molecular and biochemical characterization of a new alkaline active multidomain xylanase from alkaline wastewater sludge

  2012influential citation
• Genome Sequence of Paenibacillus sp. Strain Aloe-11, an Endophytic Bacterium with Broad Antimicrobial Activity and Intestinal Colonization Ability

  2012cites this paper
• Novel structural features of xylanase A1 from Paenibacillus sp. JDR-2.

  2012influential citation
• Complete genome sequence of Paenibacillus sp. strain JDR-2

  2012influential citation
• The hemicellulolytic enzyme arsenal of Thermobacillus xylanilyticus depends on the composition of biomass used for growth

  2012cites this paper
• Draft Genome Sequence of Paenibacillus elgiiB69, a Strain with Broad Antimicrobial Activity

  2011cites this paper
• Production of hyperthermostable GH10 xylanase Xyl10B from Thermotoga maritima in transplastomic plants enables complete hydrolysis of methylglucuronoxylan to fermentable sugars for biofuel production

  2011cites this paper
• Cell Surface Xylanases of the Glycoside Hydrolase Family 10 Are Essential for Xylan Utilization by Paenibacillus sp. W-61 as Generators of Xylo-Oligosaccharide Inducers for the Xylanase Genes

  2010influential citation
• GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems

  2010cites this paper
• Cloning and characterization of a xylanase, KRICT PX1 from the strain Paenibacillus sp. HPL-001.

  2010cites this paper
• Occurrence, Structure, Chemistry, Genetics, Morphogenesis, and Functions of S-Layers

  2010cites this paper
• Aldouronate Utilization in Paenibacillus sp. Strain JDR-2: Physiological and Enzymatic Evidence for Coupling of Extracellular Depolymerization and Intracellular Metabolism

  2009influential citation
• Cloning, sequencing, and expression of the gene encoding a multidomain endo-beta-1,4-xylanase from Paenibacillus curdlanolyticus B-6, and characterization of the recombinant enzyme.

  2009influential citation
• Paenibacillus ssp et procédé de fermentation de matières ligno-cellulosiques

  2009cites this paper
• Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.

  2009cites this paper
• Complete Fermentation of Xylose and Methylglucuronoxylose Derived from Methylglucuronoxylan by Enterobacter asburiae Strain JDR-1

  2008cites this paper
• The role of bias in crystallization conditions in automated microseeding.

  2008cites this paper
• Metabolism Depolymerization and Intracellular Evidence for Coupling of Extracellular Strain Jdr-2: Physiological and Enzymatic Sp. Paenibacillus Aldouronate Utilization In

  2008cites this paper
• The Bacillus subtilis ydjL (bdhA) Gene Encodes Acetoin Reductase/2,3-Butanediol Dehydrogenase

  2008cites this paper
• Structure, Function, and Regulation of the Aldouronate Utilization Gene Cluster from Paenibacillus sp. Strain JDR-2

  2007cites this paper
• Characterization of XynC from Bacillus subtilis subsp. subtilis Strain 168 and Analysis of Its Role in Depolymerization of Glucuronoxylan

  2006cites this paper