Haplotype inference for present-absent genotype data using previously identified haplotypes and haplotype patterns

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Bioinform.

• Publication date

  2007-09-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/bioinformatics/btm371PMID 17644820
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2005cited by this paper
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  2005cited by this paper
• KIR genes.

  2005cited by this paper
• Haplotype analysis of killer cell immunoglobulin-like receptor genes in 77 Korean families.

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  2002influential reference
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  2001cited by this paper
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  2001influential reference
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  2000cited by this paper
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  1998cited by this paper
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  1995cited by this paper
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  1991cited by this paper
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  1990cited by this paper

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