Molecular dynamics study of secondary structure motion in proteins: Application to myohemerythrin

No abstract is available for this paper.

• Publication year

  1990

• Venue

  Proteins: Structure, Function, and Bioinformatics

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Physics, Chemistry

• Identifiers
  DOI 10.1002/prot.340070308PMID 2362947
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Numerical recipes

  1990cited by this paper
• Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

  1988cited by this paper
• Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin.

  1987cited by this paper
• Structure of myohemerythrin in the azidomet state at 1.7/1.3 A resolution.

  1987cited by this paper
• Description of Overall Anisotropy in Diffraction from Macromolecular Crystals

  1987cited by this paper
• Helix movements and the reconstruction of the haem pocket during the evolution of the cytochrome c family.

  1985cited by this paper
• Binuclear oxygen carriers: Hemerythrin

  1984cited by this paper
• Mechanisms of domain closure in proteins.

  1984cited by this paper
• Transmission of conformational change in insulin

  1983cited by this paper
• CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

  1983cited by this paper
• Comparison of simple potential functions for simulating liquid water

  1983cited by this paper
• Raman and infrared spectroscopy of the oxo-bridged iron(III) complex, [Cl3Fe-O-FeCl3]-2 as a spectroscopic model for the oxo bridge in hemerythrin and ribonucleotide reductase.

  1982cited by this paper
• How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins.

  1980cited by this paper
• Resonance Raman spectroscopy of iron-oxygen vibrations in hemerythrin.

  1980cited by this paper
• Tabulation of infrared spectral data

  1977cited by this paper
• Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes

  1977cited by this paper
• Hemerythrin: alternative oxygen carrier.

  1976cited by this paper
• A solution for the best rotation to relate two sets of vectors

  1976cited by this paper

• Enriching Anticancer Drug Pipeline with Potential Inhibitors of Cyclin-Dependent Kinase-8 Identified from Natural Products

  2024cites this paper
• Engineering the protein dynamics of an ancestral luciferase

  2020cites this paper
• A Molecular-Modeling Toolbox Aimed at Bridging the Gap between Medicinal Chemistry and Computational Sciences

  2013cites this paper
• Molecular Shape Descriptors

  2007cites this paper
• High‐resolution prediction of protein helix positions and orientations

  2004cites this paper
• Native state protein dynamics.

  1999cites this paper
• Unit‐vector RMS (URMS) as a tool to analyze molecular dynamics trajectories

  1999cites this paper
• A pseudo-particle approach for studying protein-ligand models truncated to their active sites.

  1998cites this paper
• A synthetic picture of intramolecular dynamics of proteins. Towards a contemporary statistical theory of biochemical processes.

  1998cites this paper
• Domain motions in dihydrofolate reductase: a molecular dynamics study.

  1997cites this paper
• Protein machine model of enzymatic reactions gated by enzyme internal dynamics.

  1997cites this paper
• Lagrangian molecular dynamics using selected conformational degrees of freedom, with application to the pseudorotation dynamics of furanose rings

  1994cites this paper
• Scaling behavior of some molecular shape descriptors of polymer chains and protein backbones.

  1994cites this paper
• Evolution and neural networks/spl minus/protein secondary structure prediction above 71% accuracy

  1994cites this paper
• Structural mechanisms for domain movements in proteins.

  1994cites this paper
• Overcrossing spectra of protein backbones: Characterization of three‐dimensional molecular shape and global structural homologies

  1993cites this paper
• Global measure of molecular flexibility and shape fluctuations about conformational minima

  1993cites this paper
• Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers.

  1993cites this paper
• Picosecond timescale rigid‐helix and side‐chain motions in deoxymyoglobin

  1993cites this paper
• Global characterization of protein secondary structures. Analysis of computer-modeled protein unfolding.

  1993cites this paper
• Domain closure in lactoferrin. Two hinges produce a see-saw motion between alternative close-packed interfaces.

  1993cites this paper
• New simulation methods for proteins and DNA

  1993cites this paper
• Time scales and fluctuations of protein dynamics: metmyoglobin in aqueous solution

  1993cites this paper
• Fuzzy cluster analysis of molecular dynamics trajectories

  1992cites this paper
• Structure and dynamics of Escherichia coli chemosensory receptors. Engineered sulfhydryl studies.

  1992cites this paper
• Domain closure in mitochondrial aspartate aminotransferase.

  1992cites this paper
• Thermal motions of surface alpha-helices in the D-galactose chemosensory receptor. Detection by disulfide trapping.

  1992cites this paper
• Molecular dynamics studies of proteins and nucleic acids: Current Opinion in Structural Biology 1991, 1:191–195

  1991cites this paper
• Computational studies of ligand diffusion in globins: I. Leghemoglobin

  1991cites this paper
• Protein dynamics: comparison of simulations with inelastic neutron scattering experiments

  1991cites this paper
• Calculation of the potential of mean force using molecular dynamics with linear constraints: An application to a conformational transition in a solvated dipeptide

  1990cites this paper