Bacillus niameyensis sp. nov., a new bacterial species isolated from human gut

Bacillus niameyensis sp. nov. strain SIT3T (= CSUR P1266 = DSM 29725) is the type strain of B. niameyensis sp. nov. This Gram-positive strain was isolated from the digestive flora of a child with kwashiorkor and is a facultative anaerobic rod and a member of the Bacillaceae family. This organism is hereby described alongside its complete genome sequence and annotation. The 4  286  116 bp long genome (one chromosome but no plasmid) contains 4130 protein-coding and 66 RNA genes including five rRNA genes.

• Publication year

  2015

• Venue

  new microbes and new infections

• Publication date

  2015-09-28

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/j.nmni.2015.09.011PMID 27076913PMCID 4815930
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Current and Past Strategies for Bacterial Culture in Clinical Microbiology

  2015cited by this paper
• The Genus Bacillus

  2014cited by this paper
• A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species.

  2014cited by this paper
• ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

  2013cited by this paper
• Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov

  2013cited by this paper
• Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov.

  2013cited by this paper
• Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov.

  2013cited by this paper
• The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics

  2013cited by this paper
• Identification of Rare Pathogenic Bacteria in a Clinical Microbiology Laboratory: Impact of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry

  2013cited by this paper
• Genome sequence-based species delimitation with confidence intervals and improved distance functions

  2013cited by this paper
• Non-contiguous finished genome sequence and description of Brevibacillus massiliensis sp. nov.

  2013cited by this paper
• Microbial culturomics: paradigm shift in the human gut microbiome study.

  2012cited by this paper
• Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov.

  2012cited by this paper
• Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov.

  2012cited by this paper
• Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov.

  2012cited by this paper
• Proteinortho: Detection of (Co-)orthologs in large-scale analysis

  2011influential reference
• Bacillus oceanisediminis sp. nov., isolated from marine sediment.

  2010cited by this paper
• Bacillus horneckiae sp. nov., isolated from a spacecraft-assembly clean room.

  2010cited by this paper
• Paenibacillus oceanisediminis sp. nov. isolated from marine sediment.

  2010cited by this paper
• Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

  2010cited by this paper
• Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.

  2009cited by this paper
• PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees

  2009influential reference
• Bacillus infantis sp. nov. and Bacillus idriensis sp. nov., isolated from a patient with neonatal sepsis.

  2006cited by this paper
• Taxonomic parameters revisited : tarnished gold standards

  2006influential reference
• Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data.

  2004cited by this paper
• Bacillus galactosidilyticus sp. nov., an alkali-tolerant beta-galactosidase producer.

  2004cited by this paper
• A combined transmembrane topology and signal peptide prediction method.

  2004cited by this paper
• Improved prediction of signal peptides: SignalP 3.0.

  2004cited by this paper
• Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms.

  2004cited by this paper
• Taxonomy of the genus bacillus and related genera: the aerobic endospore-forming bacteria.

  2004cited by this paper
• "Bacillus hackensackii" sp. nov., a novel carbon dioxide sensitive bacterium isolated from blood culture.

  2003cited by this paper
• Application of the partial 16S rDNA sequence as an index for rapid identification of species in the genus Bacillus.

  2000cited by this paper
• tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

  1997cited by this paper
• Bacillus sporothermodurans, a new species producing highly heat-resistant endospores.

  1996cited by this paper
• Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons.

  1994cited by this paper
• Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

  1990cited by this paper
• A numerical classification of the genus Bacillus.

  1988cited by this paper
• Bacillus firmus-Bacillus lentus: a Series or One Species?

  1977cited by this paper

• Bacillus litorisediminis sp. nov., a Thermophilic Bacterium Isolated from Mangrove Sediment

  2023cites this paper
• Bacillus aquiflavi sp. nov., isolated from yellow water of strongly flavored Chinese baijiu.

  2020cites this paper
• Bacillus pasinlerensis sp. nov., a thermophilic bacterium isolated from a hot spring in Turkey.

  2020cites this paper
• Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)

  2019cites this paper
• Bacillus cabrialesii sp. nov., an endophytic plant growth promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) in the Yaqui Valley, Mexico.

  2019cites this paper
• Description of Bacillus kexueae sp. nov. and Bacillus manusensis sp. nov., isolated from hydrothermal sediments.

  2018cites this paper
• Genome-scale Evaluation of the Biotechnological Potential of Red Sea Bacilli Strains

  2018cites this paper
• Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?

  2017cites this paper