Genetic diversity and parentage in farmer varieties of cacao (Theobroma cacao L.) from Honduras and Nicaragua as revealed by single nucleotide polymorphism (SNP) markers

No abstract is available for this paper.

• Publication year

  2012

• Venue

  Genetic Resources and Crop Evolution

• Publication date

  2012-06-06

• Fields of study

  Agricultural and Food Sciences, Biology

• Identifiers
  DOI 10.1007/s10722-012-9847-1
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Genetic Population Structure of Cacao Plantings within a Young Production Area in Nicaragua

  2011cited by this paper
• Cacao use and the San Lorenzo Olmec

  2011cited by this paper
• A large est resource for Theobroma cacao including cDNAS isolated from various organs and under various biotic and abiotic stresses

  2010cited by this paper
• The relic Criollo cacao in Belize – genetic diversity and relationship with Trinitario and other cacao clones held in the International Cocoa Genebank, Trinidad

  2010influential reference
• SNP identification in crop plants.

  2009cited by this paper
• The Domestication and Distribution of Theobroma cacao L. in the Neotropics

  2009cited by this paper
• Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions

  2008influential reference
• Botany, Types and Populations

  2008cited by this paper
• Molecular characterization of an international cacao collection using microsatellite markers

  2008cited by this paper
• Chemical and archaeological evidence for the earliest cacao beverages

  2007cited by this paper
• Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment

  2007cited by this paper
• Accuracy and reliability of high-throughput microsatellite genotyping for cacao clone identification

  2006cited by this paper
• genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

  2006cited by this paper
• Progress in resolving identity issues among the Parinari accessions held in Trinidad : the contribution of the collaborative USDA/CRU project

  2006cited by this paper
• Assessing the Genetic Diversity in the International Cocoa Genebank, Trinidad (ICG,T) using Isozyme Electrophoresis and RAPD

  2005cited by this paper
• The genetic diversity of cacao and its utilization.

  2005influential reference
• Conceptualizing Interventions to Support On-Farm Genetic Resource Conservation

  2004cited by this paper
• Selection of international molecular standards for DNA fingerprinting of Theobroma cacao

  2004cited by this paper
• microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets

  2003cited by this paper
• Applications of single nucleotide polymorphisms in crop genetics.

  2002cited by this paper
• Cacao domestication I: the origin of the cacao cultivated by the Mayas

  2002influential reference
• Plant molecular diversity and applications to genomics.

  2002cited by this paper
• Estimating the probability of identity among genotypes in natural populations: cautions and guidelines

  2001influential reference
• Interpreting DNA evidence: Statistical genetics for forensic scientists

  2000cited by this paper
• The Amazon River Forest: A Natural History of Plants, Animals, and People

  1999cited by this paper
• The issues of in situ conservation of crop genetic resources.

  1999cited by this paper
• Statistical confidence for likelihood‐based paternity inference in natural populations

  1998influential reference
• The Chocolate Tree: A Natural History of Cacao

  1996cited by this paper
• Origins of cacao cultivation

  1995cited by this paper
• The Sacred Cacao Groves of the Maya

  1990cited by this paper
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.

  1987influential reference
• The neighbor-joining method : A new method for reconstructing phylogenetic trees

  1987influential reference
• Theobroma cacao L.

  1969cited by this paper
• Evolution of Crop Plants

  1965cited by this paper
• Cacao and Its Allies, a Taxonomic Revision of the Genus Theobroma

  1964cited by this paper

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  2023cites this paper
• Phylogenetic diversity of cacao (Theobroma cacao L.) genotypes in Colombia

  2023cites this paper
• SNP fingerprinting and farmer criteria for selection, multiplication, and traceability of cacao in Nicaragua

  2023cites this paper
• Local working collections as the foundation for an integrated conservation of Theobroma cacao L. in Latin America

  2023cites this paper
• Mango seedling genotyping reveals potential self-incompatibility and pollinator behavior

  2023cites this paper
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  2022cites this paper
• Genome-wide SNP genotyping as a simple and practical tool to accelerate the development of inbred lines in outbred tree species: An example in cacao (Theobroma cacao L.)

  2022cites this paper
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  2022cites this paper
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  2021cites this paper
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  2021influential citation
• Genetic Diversity ofCoffea arabicaL.: A Genomic Approach

  2021cites this paper
• Selecting SNP markers reflecting population origin for cacao (Theobroma cacao L.) germplasm identification

  2021cites this paper
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  2021cites this paper
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  2021cites this paper
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  2020cites this paper
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  2020influential citation
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
• Bibliography

  2019cites this paper
• Molecular Characterization of Cacao (Theobroma cacao) Germplasm from Jamaica Using Single Nucleotide Polymorphism (SNP) Markers

  2018influential citation
• Assessing hidden parentage and genetic integrity of the “United Fruit Clones” of cacao (Theobroma cacao) from Costa Rica using SNP markers

  2018cites this paper
• Ancestry informative alleles captured with reduced representation library sequencing in Theobroma cacao

  2018cites this paper
• Genetic diversity of Manihot esculenta Crantz germplasm based on single‐nucleotide polymorphism markers

  2018cites this paper
• Household Determinants of the Adoption of Improved Cassava Varieties using DNA Fingerprinting to Identify Varieties in Farmer Fields: A Case Study in Colombia

  2018cites this paper
• Genetic identity and diversity of Nigerian cacao genebank collections verified by single nucleotide polymorphisms (SNPs): a guide to field genebank management and utilization

  2018cites this paper
• Molecular Characterization of Cacao (Theobroma cacao) Germplasm from Jamaica Using Single Nucleotide Polymorphism (SNP) Markers

  2018influential citation
• UNDERSTANDING THE GENETIC STRUCTURE AND PARENTAGE OF THE CLONAL SERIES OF CACAO UF, CC, PMCT AND ARF PRESERVED IN THE INTERNATIONAL CACAO COLLECTION AT CATIE (IC3)

  2017cites this paper
• Colombia a Source of Cacao Genetic Diversity As Revealed by the Population Structure Analysis of Germplasm Bank of Theobroma cacao L.

  2017influential citation
• The Criollo cacao tree (Theobroma cacao L.): a review

  2017cites this paper
• Phylogenetic relationships among Vietnamese cocoa accessions using a non-coding region of the chloroplast DNA

  2017cites this paper
• Molecular characterization of Vietnamese cocoa genotypes (Theobroma cacao L.) using microsatellite markers

  2017cites this paper
• Genetic diversity of naturalized cacao (Theobroma cacao L.) in Puerto Rico

  2016influential citation
• Genetic base-broadening of cacao for precocity and cropping efficiency

  2016cites this paper
• Origin, Dispersal, and Current Global Distribution of Cacao Genetic Diversity

  2016cites this paper
• Developing Single Nucleotide Polymorphism (SNP) Markers for the Identification of Coffee Germplasm

  2016cites this paper
• Developing single nucleotide polymorphism markers for the identification of pineapple (Ananas comosus) germplasm

  2015cites this paper
• Identifying Litchi (Litchi chinensis Sonn.) Cultivars and Their Genetic Relationships Using Single Nucleotide Polymorphism (SNP) Markers

  2015cites this paper
• Distribución geográfica y clasificación según el color del cotiledón del cacao cubano antiguo.

  2015cites this paper
• Using Next-Generation Sequencing to Assist a Conservation Hatchery: a Single-Nucleotide Polymorphism Panel for the Genetic Management of Endangered Delta Smelt

  2015cites this paper
• The impact of SNP fingerprinting and parentage analysis on the effectiveness of variety recommendations in cacao

  2015cites this paper
• Assessing microsatellite linkage disequilibrium in wild, cultivated, and mapping populations of Theobroma cacao L. and its impact on association mapping

  2015cites this paper
• Molecular characterization of 93 genotypes of cocoa (Theobroma cacao L.) with random amplified microsatellites RAMs

  2014cites this paper
• Genetic diversity and parentage of Tunisian wild and cultivated grapevines (Vitis vinifera L.) as revealed by single nucleotide polymorphism (SNP) markers

  2014cites this paper
• Verification of genetic identity of introduced cacao germplasm in Ghana using single nucleotide polymorphism (SNP) markers

  2014cites this paper
• Accurate determination of genetic identity for a single cacao bean, using molecular markers with a nanofluidic system, ensures cocoa authentication.

  2014cites this paper
• An evaluation of gains in breeding for resistance to the cocoa swollen shoot virus disease in Ghana

  2013cites this paper
• Somatic Embryogenesis of Theobroma cacao L. : Developmental Physiology of the Embryo and Improvement of Culture Conditions

  2013cites this paper