Pleistocene climatic changes drive diversification across a tropical savanna

No abstract is available for this paper.

• Publication year

  2018

• Venue

  Molecular Ecology

• Publication date

  2018-01-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/mec.14441PMID 29178445
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Toward a Paradigm Shift

  2020cited by this paper
• Origins and patterns of endemic diversity in two specialized lizard lineages from the Australian Monsoonal Tropics (Oedura spp.)

  2018cited by this paper
• Tropical specialist vs. climate generalist: Diversification and demographic history of sister species of Carlia skinks from northwestern Australia

  2017cited by this paper
• A late Quaternary record of monsoon variability in the northwest Kimberley, Australia

  2017cited by this paper
• Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics

  2017cited by this paper
• multi‐dice: r package for comparative population genomic inference under hierarchical co‐demographic models of independent single‐population size changes

  2017influential reference
• Inferring responses to climate dynamics from historical demography in neotropical forest lizards

  2016cited by this paper
• Phylogeography, hotspots and conservation priorities: an example from the Top End of Australia

  2016cited by this paper
• Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses

  2016cited by this paper
• In the light of evolution X: Comparative phylogeography

  2016cited by this paper
• Habitat preference predicts genetic diversity and population divergence in Amazonian birds

  2016cited by this paper
• Phenotypes in phylogeography: Species’ traits, environmental variation, and vertebrate diversification

  2016cited by this paper
• A mid‐Pleistocene rainforest corridor enabled synchronous invasions of the Atlantic Forest by Amazonian anole lizards

  2016cited by this paper
• Exon capture phylogenomics: efficacy across scales of divergence

  2016influential reference
• Multilocus phylogeography reveals nested endemism in a gecko across the monsoonal tropics of Australia

  2016cited by this paper
• Phylogenomics at the tips: inferring lineages and their demographic history in a tropical lizard, Carlia amax

  2016influential reference
• EAPhy: A Flexible Tool for High-throughput Quality Filtering of Exon-alignments and Data Processing for Phylogenetic Methods

  2015cited by this paper
• Sex reversal triggers the rapid transition from genetic to temperature-dependent sex

  2015cited by this paper
• Independent Demographic Responses to Climate Change among Temperate and Tropical Milksnakes (Colubridae: Genus Lampropeltis)

  2015cited by this paper
• Community ecology in a changing environment: Perspectives from the Quaternary

  2015cited by this paper
• The aggregate site frequency spectrum for comparative population genomic inference

  2015influential reference
• Lineage Range Estimation Method Reveals Fine-Scale Endemism Linked to Pleistocene Stability in Australian Rainforest Herpetofauna

  2015cited by this paper
• RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

  2014cited by this paper
• The drivers of tropical speciation

  2014influential reference
• The biogeographical boundaries of northern Australia: evidence from ecological niche models and a multi‐locus phylogeny of Uperoleia toadlets (Anura: Myobatrachidae)

  2014influential reference
• Contrasting patterns of persistence and diversification in vicars of a widespread Australian lizard lineage (the Oedura marmorata complex)

  2014cited by this paper
• Detecting Concerted Demographic Response across Community Assemblages Using Hierarchical Approximate Bayesian Computation

  2014cited by this paper
• Identifying the World's Most Climate Change Vulnerable Species: A Systematic Trait-Based Assessment of all Birds, Amphibians and Corals

  2013cited by this paper
• Extending ecological niche models to the past 120 000 years corroborates the lack of strong phylogeographic structure in the Crested Drongo (Dicrurus forficatus forficatus) on Madagascar

  2013cited by this paper
• Broadscale Phylogeographic Structure of Five Freshwater Fishes Across the Australian Monsoonal Tropics

  2013cited by this paper
• De novo transcriptomic analyses for non‐model organisms: an evaluation of methods across a multi‐species data set

  2013cited by this paper
• The effect of sea level on glacial Indo-Pacific climate

  2013cited by this paper
• Palaeoenvironmental change in tropical Australasia over the last 30,000 years: a synthesis by the OZ-INTIMATE group

  2013cited by this paper
• Why are there so many species in the tropics?

  2013cited by this paper
• MaGnET: Malaria Genome Exploration Tool

  2013cited by this paper
• Robust Demographic Inference from Genomic and SNP Data

  2013cited by this paper
• PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

  2012influential reference
• Comparative multi-locus phylogeography confirms multiple vicariance events in co-distributed rainforest frogs

  2012cited by this paper
• Hidden biodiversity in rare northern Australian vertebrates: the case of the clawless geckos (Crenadactylus, Diplodactylidae) of the Kimberley

  2012cited by this paper
• The interplay between habitat availability and population differentiation

  2012cited by this paper
• STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

  2012cited by this paper
• Multiple biogeographical barriers identified across the monsoon tropics of northern Australia: phylogeographic analysis of the brachyotis group of rock‐wallabies

  2012cited by this paper
• Predicting organismal vulnerability to climate warming: roles of behaviour, physiology and adaptation

  2012cited by this paper
• Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

  2012influential reference
• Fast gapped-read alignment with Bowtie 2

  2012influential reference
• Biogeographic barriers in north-western Australia: an overview and standardisation of nomenclature

  2011cited by this paper
• abc: an R package for approximate Bayesian computation (ABC)

  2011cited by this paper
• EVIDENCE OF CONSTRAINED PHENOTYPIC EVOLUTION IN A CRYPTIC SPECIES COMPLEX OF AGAMID LIZARDS

  2011cited by this paper
• Dynamic refugia and species persistence: tracking spatial shifts in habitat through time

  2010cited by this paper
• Phylogeography's past, present, and future: 10 years after Avise, 2000.

  2010cited by this paper
• Sequence analysis Advance Access publication June 7, 2011 The variant call format and VCFtools

  2010cited by this paper
• Erosion of Lizard Diversity by Climate Change and Altered Thermal Niches

  2010cited by this paper
• Illumina sequencing library preparation for highly multiplexed target capture and sequencing.

  2010cited by this paper
• High-latitude climate sensitivity to ice-sheet forcing over the last 120 kyr

  2010cited by this paper
• The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

  2010influential reference
• Biogeography of the Australian monsoon tropics

  2010influential reference
• Additional file 6

  2009influential reference
• Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

  2009cited by this paper
• Combined mitochondrial and nuclear data enhance resolution of a rapid radiation of Australian rainbow skinks (Scincidae: Carlia).

  2008cited by this paper
• Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

  2008cited by this paper
• Global Warming, Elevational Range Shifts, and Lowland Biotic Attrition in the Wet Tropics

  2008cited by this paper
• Impacts of climate warming on terrestrial ectotherms across latitude

  2008cited by this paper
• Towards an Integrated Framework for Assessing the Vulnerability of Species to Climate Change

  2008cited by this paper
• A rapid bootstrap algorithm for the RAxML Web servers.

  2008cited by this paper
• Impact of a Century of Climate Change on Small-Mammal Communities in Yosemite National Park, USA

  2008cited by this paper
• Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

  2008cited by this paper
• Late Quaternary vegetation, biodiversity and fire dynamics on the southern Brazilian highland and their implication for conservation and management of modern Araucaria forest and grassland ecosystems

  2007cited by this paper
• The nature of Northern Australia : natural values, ecological processes and future prospects

  2007cited by this paper
• A MULTILOCUS PERSPECTIVE ON REFUGIAL ISOLATION AND DIVERGENCE IN RAINFOREST SKINKS (CARLIA)

  2006cited by this paper
• Ethylene-induced stomatal closure in Arabidopsis occurs via AtrbohF-mediated hydrogen peroxide synthesis.

  2006cited by this paper
• TEST FOR SIMULTANEOUS DIVERGENCE USING APPROXIMATE BAYESIAN COMPUTATION

  2006cited by this paper
• Detecting the number of clusters of individuals using the software structure: a simulation study

  2005cited by this paper
• Automated generation of heuristics for biological sequence comparison

  2005cited by this paper
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004influential reference
• FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis)

  2004cited by this paper
• A Complete Guide to Reptiles of Australia

  2003cited by this paper
• Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

  2003cited by this paper
• Statistical Phylogeography

  2002cited by this paper
• A molecular phylogeny of rainbow skinks (Scincidae : Carlia): taxonomic and biogeographic implications

  2002cited by this paper
• Ecological Consequences of Recent Climate Change

  2001cited by this paper
• Sea-level and environmental changes since the last interglacial in the Gulf of Carpentaria, Australia: an overview

  2001cited by this paper
• Inference of population structure using multilocus genotype data.

  2000cited by this paper
• CAP3: A DNA sequence assembly program.

  1999cited by this paper
• Biological response to climate change on a tropical mountain

  1999cited by this paper
• Comparative phylogeography: concepts and applications

  1998cited by this paper
• A 30,000 year record of extreme floods in tropical Australia from relict plunge‐pool deposits: Implications for future climate change

  1996cited by this paper
• Mitochondrial DNA Sequence Divergence and Phylogenetic Relationships among Eight Chromosome Races of the Sceloporus Grammicus Complex (Phrynosomatidae) in Central Mexico

  1994cited by this paper
• Biogeography and conservation of reptiles, mammals and birds across north-western Australia: an inventory and base for planning an ecological reserve system

  1992cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• Life-history strategies of Australian lizards: a comparison between the tropics and the temperate zone

  1988cited by this paper
• Intraspecific Phylogeography: The Mitochondrial DNA Bridge Between Population Genetics and Systematics

  1987cited by this paper
• Impact of a century of climate change on small-mammal communities in Yosemite

  year unknowncited by this paper

• A Phylogenetic Approach to Delimitate Species in a Probabilistic Way

  2025cites this paper
• Range size variably predicts genetic diversity in Gehyra geckos.

  2025cites this paper
• Cladistic Relationships and Landscape Genetics of the Endangered Indian Peacock Softshell Turtle Nilssonia hurum (Gray, 1830): Implications for Strategic Conservation Planning

  2025cites this paper
• Comparing rates of molecular and morphological evolution identifies multiple speciation trajectories in a diverse radiation of skinks.

  2025cites this paper
• Museum Skins Enable Identification of Introgression Associated with Cytonuclear Discordance

  2024influential citation
• Speciation across biomes: Rapid diversification with reproductive isolation in the Australian delicate mice

  2024cites this paper
• The diverse viromes of Australian lizards are shaped by host taxonomy and habitat

  2024cites this paper
• Climate change from an ectotherm perspective: evolutionary consequences and demographic change in amphibian and reptilian populations

  2024cites this paper
• Niche dynamics modulate population connectivity between disjunct ranges of the Cape Robin-chat (Cossypha caffra) supporting an aridlands species pump

  2024cites this paper
• The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat

  2024cites this paper
• Dragons in the tropics - Phylogeography and speciation in Diporiphora lizards and common geographic breaks in co-distributed taxa.

  2024cites this paper
• The contemporary distribution of grasses in Australia: A process of immigration, dispersal and shifting dominance

  2023cites this paper
• Notes from the taxonomic disaster zone: Evolutionary drivers of intractable species boundaries in an Australian lizard clade (Scincidae: Ctenotus)

  2023cites this paper
• Multilocus phylogeography, population genetics and niche evolution of Australian brown and black-tailed treecreepers (Aves: Climacteris)

  2023cites this paper
• Initiation of speciation across multiple dimensions in a rock‐restricted, tropical lizard

  2022cites this paper
• Drivers of unique and asynchronous population dynamics in Malagasy herpetofauna

  2022cites this paper
• Variation in intraspecific demography drives localised concordance but species-wide discordance in response to past climatic change

  2022cites this paper
• Future‐proofing the koala: Synergising genomic and environmental data for effective species management

  2022influential citation
• Sequence Capture From Historical Museum Specimens: Maximizing Value for Population and Phylogenomic Studies

  2022cites this paper
• Comparative phylogeography in the genomic age: Opportunities and challenges

  2022cites this paper
• Genetic and Ecogeographic Controls on Species Cohesion in Australia’s Most Diverse Lizard Radiation

  2021cites this paper
• The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics

  2021cites this paper
• Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change

  2021cites this paper
• Comparative and predictive phylogeography in the South American diagonal of open formations: Unravelling the biological and environmental influences on multitaxon demography

  2021cites this paper
• Environment predicts repeated body size shifts in a recent radiation of Australian mammals *

  2020cites this paper
• Predictors of phylogeographic structure among codistributed taxa across the complex Australian monsoonal tropics

  2020cites this paper
• Evolution of reptile diversity in tropical savannas - a study across scales and continents

  2020influential citation
• Demographic inference provides insights into the extirpation and ecological dominance of eusocial snapping shrimps

  2020cites this paper
• Volcanism rather than climatic oscillations explains the shared phylogeographic patterns among ecologically distinct plant species in the southernmost areas of the South American Arid Diagonal

  2020cites this paper
• Shifting ecosystem connectivity during the Pleistocene drove diversification and gene‐flow in a species complex of Neotropical birds (Tityridae: Pachyramphus)

  2020cites this paper
• Phylogenomics Uncovers Confidence and Conflict in the Rapid Radiation of Australo-Papuan Rodents.

  2020cites this paper
• Patterns of species richness and endemism of butterflies and day-flying moths in the monsoon tropics of northern Australia

  2020cites this paper
• Comparative phylogeographic inference with genome‐wide data from aggregated population pairs

  2020cites this paper
• On and off the rocks: persistence and ecological diversification in a tropical Australian lizard radiation

  2019cites this paper
• Contrasting scales of local persistence between monsoonal and arid biomes in closely related, low‐dispersal vertebrates

  2019cites this paper
• Comparative phylogeography of Passerine birds with a circum-Amazonian distribution

  2019cites this paper
• Phylogenomics of a rapid radiation: the Australian rainbow skinks

  2018cites this paper
• Ants in Australia’s Monsoonal Tropics: CO1 Barcoding Reveals Extensive Unrecognised Diversity

  2018cites this paper
• Detecting spatial dynamics of range expansions with geo-referenced genomewide SNP data and the geographic spectrum of shared alleles

  2018cites this paper
• Phylogeographic evidence for evolutionary refugia in the Gulf sandstone ranges of northern Australia

  2018cites this paper
• Genetic Diversity and Conservation Units: Dealing With the Species-Population Continuum in the Age of Genomics

  2018cites this paper
• Kimberley Top End Melville Island English

  2017cites this paper