Codon reassignment and amino acid composition in hemichordate mitochondria.

No abstract is available for this paper.

• Publication year

  1998

• Venue

  Proceedings of the National Academy of Sciences of the United States of America

• Publication date

  1998-03-31

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1073/PNAS.95.7.3703PMID 9520430PMCID PMC19900
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Codons AGA and AGG are read as glycine in ascidian mitochondria

  2006cited by this paper
• The mitochondrial DNA molecule ofDrosophila yakuba: Nucleotide sequence, gene organization, and genetic code

  2005cited by this paper
• Further comments on codon reassignment.

  1997cited by this paper
• Response

  1997cited by this paper
• The 'polysemous' codon--a codon with multiple amino acid assignment caused by dual specificity of tRNA identity.

  1997cited by this paper
• Further comments on codon reassignment. Response.

  1997cited by this paper
• tRNA structure, biosynthesis, and function Edited by and Uttam L. RajBhandary, ASM Press, 1995. US$85.00 (member), US$99.00 (non-member) (xiii + 572 pages) ISBN 1 55581 073 X

  1996influential reference
• Codon reassignment in Candida species: an evolutionary conundrum.

  1996cited by this paper
• Reinterpretation of Yunnanozoon as the earliest known hemichordate

  1996cited by this paper
• Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris.

  1995cited by this paper
• Evolution of the genetic code

  1995influential reference
• The phylogenetic position of the pterobranch hemichordates based on 18S rDNA sequence data.

  1995cited by this paper
• Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome.

  1995cited by this paper
• Transfer RNA mutation and the malleability of the genetic code.

  1994cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• The complete mitochondrial DNA sequence of the crustacean Artemia franciscana

  1994cited by this paper
• Mitochondrial DNA of the sea anemone, Metridium senile (Cnidaria): Prokaryote-like genes for tRNAf-Met and small-subunit ribosomal RNA, and standard genetic code specificities for AGR and ATA codons

  1994cited by this paper
• Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization.

  1994cited by this paper
• Unassigned or nonsense codons in Micrococcus luteus.

  1993cited by this paper
• A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.

  1992cited by this paper
• Planarian mitochondria II. The unique genetic code as deduced from cytochrome c oxidase subunit I gene sequences

  1992cited by this paper
• The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum.

  1992cited by this paper
• An extreme codon preference strategy: codon reassignment.

  1991cited by this paper
• Evolution of life : fossils, molecules, and culture

  1991cited by this paper
• CGG: an unassigned or nonsense codon in Mycoplasma capricolum.

  1991cited by this paper
• Evolution of the mitochondrial genetic code IV. AAA as an asparagine codon in some animal mitochondria

  1990cited by this paper
• Codon reassignment (codon capture) in evolution

  1989cited by this paper
• Platyhelminth mitochondrial DNA: Evidence for early evolutionary origin of a tRNAserAGN that contains a dihydrouridine arm replacement loop, and of serine-specifying AGA and AGG codons

  1989cited by this paper
• Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA.

  1987cited by this paper
• The neutral theory of molecular evolution.

  1983cited by this paper
• Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code

  1983cited by this paper
• Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code

  1983cited by this paper
• A major lysine tRNA with a CUU anticodon in insect mitochondria.

  1983cited by this paper
• Sequence and organization of the human mitochondrial genome

  1981cited by this paper
• A different genetic code in human mitochondria

  1979cited by this paper
• Non-Darwinian evolution.

  1969cited by this paper
• CORRELATION BETWEEN BASE COMPOSITION OF DEOXYRIBONUCLEIC ACID AND AMINO ACID COMPOSITION OF PROTEIN.

  1961cited by this paper

• Valine aminoacyl-tRNA synthetase promotes therapy resistance in melanoma

  2024cites this paper
• Comparative mitogenomic analysis of subterranean and surface amphipods (Crustacea, Amphipoda) with special reference to the family Crangonyctidae

  2023cites this paper
• The Tardigrade damage suppressor protein Dsup promotes DNA damage in neurons.

  2023cites this paper
• Determination of the Amino Acid Recruitment Order in Early Life by Genome-Wide Analysis of Amino Acid Usage Bias

  2022cites this paper
• Intraspecific nucleotide polymorphisms in seven complete sequences of mitochondrial DNA of the luminous ostracod, Vargula hilgendorfii (Crustacea, Ostracoda)

  2021cites this paper
• Genomes contain relics of a triplet code connecting the origins of primordial RNA synthesis to the origins of genetically coded protein synthesis

  2021cites this paper
• Unexpected molecular and morphological diversity of hemichordate larvae from the Neotropics

  2019cites this paper
• Mitogenomics Reveals a Novel Genetic Code in Hemichordata

  2018cites this paper
• Regeneration of the acorn worm pygochord with the implication for its convergent evolution with the notochord

  2018cites this paper
• The Fungus Candida albicans Tolerates Ambiguity at Multiple Codons

  2016cites this paper
• Characterization of the complete mitogenomes of two Neoscona spiders (Araneae: Araneidae) and its phylogenetic implications.

  2016cites this paper
• The phylogeny, evolutionary developmental biology, and paleobiology of the Deuterostomia: 25 years of new techniques, new discoveries, and new ideas

  2016cites this paper
• Pathways of Genetic Code Evolution in Ancient and Modern Organisms

  2015cites this paper
• The Complete Mitochondrial Genome of Delia antiqua and Its Implications in Dipteran Phylogenetics

  2015cites this paper
• Deep metazoan phylogeny : the backbone of the tree of life : new insights from analyses of molecules, morphology, and theory of data analysis

  2014cites this paper
• Migration and Interaction in a Contact Zone: mtDNA Variation among Bantu-Speakers in Southern Africa

  2014cites this paper
• SHIFT: Server for hidden stops analysis in frame-shifted translation

  2013cites this paper
• The Compass-like Locus, Exclusive to the Ambulacrarians, Encodes a Chromatin Insulator Binding Protein in the Sea Urchin Embryo

  2013cites this paper
• Mitochondrial Genomes and Frameshift Mutations: Hidden Stop Codons, their Functional Consequences and Disease Associations

  2013cites this paper
• [Review of mtDNA in molecular evolution studies].

  2013cites this paper
• The impact of mitochondrial genome analyses on the understanding of deuterostome phylogeny.

  2013cites this paper
• Sequence analysis of four caprine mitochondria DNA lineages

  2012cites this paper
• Probable presence of an ubiquitous cryptic mitochondrial gene on the antisense strand of the cytochrome oxidase I gene

  2011influential citation
• The enigmatic mitochondrial genome of Rhabdopleura compacta (Pterobranchia) reveals insights into selection of an efficient tRNA system and supports monophyly of Ambulacraria

  2011influential citation
• Erosion of phylogenetic signal in tunicate mitochondrial genomes on different levels of analysis.

  2010cites this paper
• The mitochondrial genome of the butterfly Papilio xuthus (Lepidoptera: Papilionidae) and related phylogenetic analyses

  2010cites this paper
• Evolution of the Genetic Code

  2010cites this paper
• Mitochondrial genome evolution in the Metazoa: Insights from Class Hexactinellida (Phylum Porifera) and Phylum Cnidaria

  2010cites this paper
• The complete mitochondrial genome of Cephalothrix simula (Iwata) (Nemertea: Palaeonemertea).

  2009cites this paper
• Ambush hypothesis revisited: Evidences for phylogenetic trends

  2009cites this paper
• Comparative Analysis of Codon Usage and tRNA in Mitochondrial Genomes of Gallus Gallus

  2009cites this paper
• The origins of graptolites and other pterobranchs: a journey from ‘Polyzoa’

  2008cites this paper
• Evolving genetic code

  2008cites this paper
• DNA Codes and Information: Formal Structures and Relational Causes

  2008cites this paper
• Adaptive antioxidant methionine accumulation in respiratory chain complexes explains the use of a deviant genetic code in mitochondria

  2008cites this paper
• Review Evolving genetic code

  2008cites this paper
• Glass sponges and bilaterian animals share derived mitochondrial genomic features: a common ancestry or parallel evolution?

  2007cites this paper
• Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.

  2007cites this paper
• The complete mitochondrial genome of Pseudocellus pearsei (Chelicerata: Ricinulei) and a comparison of mitochondrial gene rearrangements in Arachnida

  2007cites this paper
• THE SYSTEMATICS AND PHYLOGENETIC RELATIONSHIPS OF VETULICOLIANS

  2007cites this paper
• The Mechanisms of Codon Reassignments in Mitochondrial Genetic Codes

  2007cites this paper
• The mitochondrial DNA of Xenoturbella bocki: genomic architecture and phylogenetic analysis

  2007cites this paper
• A Genetic Code Alteration Is a Phenotype Diversity Generator in the Human Pathogen Candida albicans

  2007cites this paper
• On the molecular mechanism of the evolution of genetic code alterations

  2006cites this paper
• [The molecular mechanism of evolution of changes in the genetic code].

  2006cites this paper
• Parallel Evolution of the Genetic Code in Arthropod Mitochondrial Genomes

  2006cites this paper
• The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features

  2006cites this paper
• Major rearrangements characterize the mitochondrial genome of the isopod Idotea baltica (Crustacea: Peracarida).

  2006cites this paper
• The mitochondrial genomes of Campodea fragilis and Campodea lubbocki (Hexapoda: Diplura): High genetic divergence in a morphologically uniform taxon.

  2005cites this paper
• Information theory, evolution and the origin of life

  2005cites this paper
• Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution.

  2005cites this paper
• Characterisation of the 'Out-cold' mutations of Drosophila melanogaster

  2005cites this paper
• Mitochondrial Genetic Codes Evolve to Match Amino Acid Requirements of Proteins

  2004cites this paper
• Developmental mechanism and evolutionary origin of vertebrate left/right asymmetries

  2004cites this paper
• Isolation of Hox and Parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes.

  2004cites this paper
• Xenoturbella is a deuterostome that eats molluscs

  2003cites this paper
• Structure and organization of the mitochondrial genome of the canine heartworm, Dirofilaria immitis

  2003cites this paper
• Comparative Genomics Via Phylogenetic Invariants For Jukes-Cantor Semigroups

  2003cites this paper
• Dynamic Insertion–Deletion of Introns in Deuterostome EF-1α Genes

  2002cites this paper
• Cladistic analyses of molecular characters: The good, the bad and the ugly

  2002cites this paper
• Complete mitochondrial DNA of the hagfish, Eptatretus burgeri: the comparative analysis of mitochondrial DNA sequences strongly supports the cyclostome monophyly.

  2002cites this paper
• Nonsense Codons and Unassigned Codons

  2002cites this paper
• Dynamic insertion-deletion of introns in deuterostome EF-1alpha genes.

  2002cites this paper
• Bayesian Phylogenetic Analysis Supports Monophyly of Ambulacraria and of Cyclostomes

  2002cites this paper
• How Mitochondria Redefine the Code

  2001influential citation
• Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences

  2001cites this paper
• Origin and evolution of the neural crest: A hypothetical reconstruction of its evolutionary history

  2001cites this paper
• Rewiring the keyboard: evolvability of the genetic code

  2001cites this paper
• Genetic Code Variations in Mitochondria: tRNA as a Major Determinant of Genetic Code Plasticity

  2001cites this paper
• Chordate and Vertebrate Body Plans

  2001cites this paper
• The A/P axis in echinoderm ontogeny and evolution: evidence from fossils and molecules

  2000cites this paper
• Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

  2000cites this paper
• Bilaterian origins: significance of new experimental observations.

  2000cites this paper
• The complete nucleotide sequence of the mitochondrial DNA of the agnathan Lampetra fluviatilis: bearings on the phylogeny of cyclostomes.

  2000cites this paper
• Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa.

  2000cites this paper
• Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms.

  2000cites this paper
• THE BLACK HOLE OF SYMMETRIC MOLECULAR EVOLUTION

  2000cites this paper
• Probability models for genome rearrangement and linear invariants for phylogenetic inference

  1999cites this paper
• Phylogenetic Invariants for Genome Rearrangements

  1999cites this paper
• Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny

  1999cites this paper
• Origin of the chordate central nervous system – and the origin of chordates

  1999cites this paper
• The presence of pseudouridine in the anticodon alters the genetic code: a possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm mitochondria.

  1999cites this paper
• Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus)

  1999cites this paper
• A comparative molecular approach to mesodermal patterning in basal deuterostomes: the expression pattern of Brachyury in the enteropneust hemichordate Ptychodera flava.

  1999cites this paper
• The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria.

  1998cites this paper
• Evolving the Genetic Code

  1969cites this paper