flowering plants Widespread genome duplications throughout the history of Material Supplemental

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Not labeled

• Identifiers

  No identifiers available.

• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• THE AGE OF THE ANGIOSPERMS: A MOLECULAR TIMESCALE WITHOUT A CLOCK

  2005cited by this paper
• Modeling gene and genome duplications in eukaryotes.

  2005influential reference
• Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

  2005cited by this paper
• The Genomes of Oryza sativa: A History of Duplications

  2005cited by this paper
• Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics

  2005cited by this paper
• The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history.

  2005cited by this paper
• Two Rounds of Whole Genome Duplication in the Ancestral Vertebrate

  2005cited by this paper
• Genome duplication and the origin of angiosperms.

  2005cited by this paper
• To B or Not to B a flower: the role of DEFICIENS and GLOBOSA orthologs in the evolution of the angiosperms.

  2005cited by this paper
• 2R or not 2R: Testing hypotheses of genome duplication in early vertebrates

  2004cited by this paper
• Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication.

  2004cited by this paper
• Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

  2004influential reference
• Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

  2004cited by this paper
• EST clustering error evaluation and correction

  2004cited by this paper
• Comparative genome analysis of monocots and dicots, toward characterization of angiosperm diversity.

  2004influential reference
• Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models

  2004cited by this paper
• Mining EST databases to resolve evolutionary events in major crop species.

  2004cited by this paper
• Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

  2004cited by this paper
• The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

  2004cited by this paper
• MUSCLE: a multiple sequence alignment method with reduced time and space complexity

  2004cited by this paper
• PlantGDB, plant genome database and analysis tools

  2004cited by this paper
• Noncoding plastid trnT‐trnF sequences reveal a well resolved phylogeny of basal angiosperms

  2003influential reference
• Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

  2003cited by this paper
• A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

  2003influential reference
• The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: implications for the correlation between the synonymous substitution rate and codon usage bias.

  2003cited by this paper
• Mutational bias affects protein evolution in flowering plants.

  2003cited by this paper
• A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.

  2003cited by this paper
• Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.

  2003cited by this paper
• Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

  2003influential reference
• Epigenetic phenomena and the evolution of plant allopolyploids.

  2003cited by this paper
• Angiosperm phylogeny based on matK sequence information.

  2003cited by this paper
• Extensive genomic duplication during early chordate evolution

  2002cited by this paper
• Evidence of en bloc duplication in vertebrate genomes

  2002cited by this paper
• Phylogeny of seed plants based on evidence from eight genes.

  2002cited by this paper
• The root of the angiosperms revisited

  2002cited by this paper
• The hidden duplication past of Arabidopsis thaliana

  2002cited by this paper
• Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

  2002cited by this paper
• Are we polyploids? A brief history of one hypothesis.

  2001cited by this paper
• Gene duplication and the structure of eukaryotic genomes.

  2001cited by this paper
• Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

  2001cited by this paper
• Extensive Duplication and Reshuffling in the Arabidopsis Genome

  2000cited by this paper
• The evolutionary fate and consequences of duplicate genes.

  2000influential reference
• Polyploid incidence and evolution.

  2000cited by this paper
• Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models.

  2000cited by this paper
• The origins of genomic duplications in Arabidopsis.

  2000influential reference
• Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.

  2000cited by this paper
• Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis.

  2000cited by this paper
• Isozyme analysis of theCerastium alpinum-C. arcticum complex (Caryophyllaceae) supports a splitting ofC. arcticum Lange

  2000cited by this paper
• Basal Lineages of Angiosperms: Relationships and Implications for Floral Evolution

  2000cited by this paper
• The EMMIX software for the fitting of mixtures of normal and t-components

  1999influential reference
• Polyploidy: recurrent formation and genome evolution.

  1999cited by this paper
• ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences

  1999cited by this paper
• Preservation of duplicate genes by complementary, degenerative mutations.

  1999cited by this paper
• Phylogenies of Developmentally Important Proteins Do Not Support the Hypothesis of Two Rounds of Genome Duplication Early in Vertebrate History

  1999cited by this paper
• Evolution of genetic mechanisms controlling petal development

  1999cited by this paper
• Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages.

  1998cited by this paper
• Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

  1998cited by this paper
• Positive Darwinian selection after gene duplication in primate ribonuclease genes.

  1998cited by this paper
• Base-calling of automated sequencer traces using phred. II. Error probabilities.

  1998cited by this paper
• Molecular evidence for an ancient duplication of the entire yeast genome

  1997cited by this paper
• PAML: a program package for phylogenetic analysis by maximum likelihood

  1997cited by this paper
• Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL.

  1996influential reference
• Genome duplication in soybean (Glycine subgenus soja).

  1996cited by this paper
• Stomatal Size in Fossil Plants: Evidence for Polyploidy in Majority of Angiosperms

  1994cited by this paper
• A codon-based model of nucleotide substitution for protein-coding DNA sequences.

  1994cited by this paper
• Phylogenetic analysis of rbcL sequences identifies Acorus calamus as the primal extant monocotyledon.

  1993cited by this paper
• Polyploidy and the evolution of domesticated plants

  1993cited by this paper
• Isozyme Evidence for Ancient Polyploidy in Primitive Angiosperms

  1990cited by this paper
• Fundamentals of molecular evolution

  1990cited by this paper
• Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.

  1987influential reference
• Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.

  1986cited by this paper
• Origins of polyploids.

  1979cited by this paper
• Evolutionary implications of polyploidy in amphibians and reptiles.

  1979cited by this paper
• Estimating the Dimension of a Model

  1978cited by this paper
• Evolution by Gene Duplication

  1970influential reference
• Variation and Evolution in Plants.

  1951cited by this paper
• Recent advances in cytology

  1932cited by this paper
• The Origin of Adaptations

  1929cited by this paper
• More Letters of Charles Darwin

  year unknowninfluential reference

• Sequence, expression divergence, and complementation of homologous ALCATRAZ loci in Brassica napus

  2009cites this paper