The crystal structure of d(GGATGGGAG) forms an essential part of the binding site for transcription factor IIIA

No abstract is available for this paper.

• Publication year

  1986

• Venue

  Nature

• Publication date

  1986-08-14

• Fields of study

  Biology, Chemistry

• Identifiers
  DOI 10.1038/322661A0
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Molecular structure of the octamer d(G-G-C-C-G-G-C-C): modified A-DNA.

  2011cited by this paper
• Major groove or minor groove?

  1986cited by this paper
• Sequence homology of the yeast regulatory protein ADR1 with Xenopus transcription factor TFIIIA

  1986cited by this paper
• Structural homology of the product of the Drosophila Krüppel gene with Xenopus transcription factor IIIA

  1986cited by this paper
• Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: application to 5' d(C-G-T-A-C-G)2.

  1986cited by this paper
• Identification of the binding site on 5S rRNA for the transcription factor IIIA: proposed structure of a common binding site on 5S rRNA and on the gene.

  1986cited by this paper
• An underlying repeat in some transcriptional control sequences corresponding to half a double helical turn of DNA.

  1986cited by this paper
• Promoter-specific activation of RNA polymerase II transcription by Sp1

  1986cited by this paper
• The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC).

  1985cited by this paper
• Sequence and structure of the serendipity locus of Drosophila melanogaster. A densely transcribed region including a blastoderm-specific gene.

  1985cited by this paper
• Repetitive zinc‐binding domains in the protein transcription factor IIIA from Xenopus oocytes.

  1985cited by this paper
• Structural analysis of a triple complex between the histone octamer, a Xenopus gene for 5S RNA and transcription factor IIIA.

  1985cited by this paper
• A base-centred explanation of the B-to-A transition in DNA.

  1984cited by this paper
• A new approach to structure determination of large molecules by multi-dimensional search methods

  1984cited by this paper
• DNA structural variations in the E. coli tyrT promoter.

  1984cited by this paper
• Sequence-dependent conformation of an A-DNA double helix. The crystal structure of the octamer d(G-G-T-A-T-A-C-C).

  1983cited by this paper
• Contact points between a positive transcription factor and the Xenopus 5S RNA gene.

  1982cited by this paper
• Rapid synthesis of oligodeoxyribonucleotides. VII. Solid phase synthesis of oligodeoxyribonucleotides by a continuous flow phosphotriester method on a kieselguhr-polyamide support.

  1982cited by this paper
• Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G.

  1982cited by this paper
• BIOMOLECULAR STRUCTURE, CONFORMATION, FUNCTION, AND EVOLUTION

  1981cited by this paper
• STEREOCHEMICALLY RESTRAINED CRYSTALLOGRAPHIC LEAST-SQUARES REFINEMENT OF MACROMOLECULE STRUCTURES

  1981cited by this paper
• How a simple animal gene works.

  1980cited by this paper
• A control region in the center of the 5S RNA gene directs specific initiation of transcription: II. The 3' border of the region.

  1980cited by this paper
• A structure-factor least-squares refinement procedure for macromolecular structures using constrained and restrained parameters

  1977cited by this paper
• Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations: x-ray diffraction analyses of the molecular conformations of polyadenylic acid--polyuridylic acid and polyinosinic acid--polycytidylic acid.

  1973cited by this paper
• Optimised parameters for RNA double-helices.

  1972cited by this paper
• Optimised parameters for A-DNA and B-DNA.

  1972cited by this paper
• THE MOLECULAR CONFIGURATION OF DEOXYRIBONUCLEIC ACID. IV. X-RAY DIFFRACTION STUDY OF THE A FORM.

  1965cited by this paper
• The molecular configuration of deoxyribonucleic acid: II. Molecular models and their fourier transforms

  1960cited by this paper
• Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

  1953cited by this paper
• The structure of sodium thymonucleate fibres. I. The influence of water content

  1953cited by this paper
• Determination of Absolute from Relative X-Ray Intensity Data

  1942cited by this paper

• Olga Kennard as an Icon of Interdisciplinarity

  2024cites this paper
• DNA structure as observed in fibres and crystals

  2022cites this paper
• DNA crookedness regulates DNA mechanical properties at short length scales

  2018cites this paper
• Structural Analyses of Zinc Finger Domains for Specific Interactions with DNA.

  2016cites this paper
• DNA Structure as Observed in Fibers and Crystals

  2008cites this paper
• DNA: A‐, B‐, and Z‐

  2007cites this paper
• Influence of ions, hydration, and the transcriptional inhibitor P4N on the conformations of the Sp1 binding site.

  2005cites this paper
• Enantiopreferential DNA Binding: [{(5,6-dmp)2Ru}2(μ-bpm)]4+ Induces a B-to-Z Conformational Change on DNA

  2005cites this paper
• A note on sequence-dependence of DNA structure

  2004cites this paper
• Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.

  2002cites this paper
• Structure and Function of DNA

  2001cites this paper
• An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

  2000cites this paper
• A-form conformational motifs in ligand-bound DNA structures.

  2000cites this paper
• Transcription Factors Utilized by RNA Polymerase III

  1998cites this paper
• Insertion of telomere repeat sequence decreases plasmid DNA condensation by cobalt (III) hexaammine.

  1998cites this paper
• Crystal structures of A‐DNA duplexes

  1997cites this paper
• Physical basis of a protein-DNA recognition code.

  1997cites this paper
• Conformations of the sugar-phosphate backbone in helical DNA crystal structures.

  1997cites this paper
• [Cu(5,6-dmp)2]2+ selectively and reversibly converts calf thymus DNA from right-handed B to left-handed Z conformation

  1996cites this paper
• Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA.

  1996cites this paper
• Watson-Crick base-pairing properties of bicyclo-DNA.

  1996cites this paper
• The crystallization and structure analysis of oligonucleotide sequences.

  1996cites this paper
• New insights into calicheamicin-DNA interactions derived from a model nucleosome system.

  1995cites this paper
• Contribution of individual base pairs to the interaction of TFIIIA with the Xenopus 5S RNA gene.

  1994cites this paper
• One-pot selective deuteriation of 5′-dimethoxytritylated deoxynucleotide derivatives.

  1994cites this paper
• Spatial translational motions of base pairs in DNA molecules: Application of the extended matrix generator method

  1994cites this paper
• Theoretical analysis of the base stacking in DNA: choice of the force field and a comparison with the oligonucleotide crystal structures.

  1993cites this paper
• Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers.

  1993cites this paper
• Rotational dynamics of hexaamminecobalt(III) bound to oligomeric DNA: correlation with cation-induced structural transitions.

  1993cites this paper
• Induction of B-A transitions of deoxyoligonucleotides by multivalent cations in dilute aqueous solution.

  1993cites this paper
• The activating transcription factor region within the E2A promoter exists in a novel conformation.

  1993cites this paper
• Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes

  1993cites this paper
• DNA conformation and configuration in protein-DNA complexes

  1992cites this paper
• Solution structure of [d(GCGTATACGC)]2.

  1992cites this paper
• DNA flexibility as a function of allomorphic conformation and of base sequence

  1992cites this paper
• NMR Studies of Nucleic Acids and Their Complexes

  1992cites this paper
• Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes.

  1992cites this paper
• Single crystals of long DNA molecules.

  1992cites this paper
• Zinc induces a bend within the transcription factor IIIA-binding region of the 5 S RNA gene.

  1992cites this paper
• Crystal and molecular structure of the A-DNA dodecamer d(CCGTACGTACGG). Choice of fragment helical axis.

  1992cites this paper
• Spectroscopic studies of the DNA binding site of the GAL4 "zinc finger" protein.

  1991cites this paper
• The flexibility of A-form DNA.

  1991cites this paper
• Selectivity of Escherichia coli RNA polymerase for template conformation.

  1991cites this paper
• Einkristall‐Röntgenstrukturanalysen von Oligonucleotiden und Oligonucleotid‐Wirkstoff‐Komplexen

  1991cites this paper
• Computer simulation of DNA supercoiling.

  1991cites this paper
• A note on crystal packing and global helix structure in short A-DNA duplexes.

  1991cites this paper
• Xenopus transcription factor IIIA (XTFIIIA): after a decade of research.

  1991cites this paper
• Determining local conformational variations in DNA. Nuclear magnetic resonance structures of the DNA duplexes d(CGCCTAATCG) and d(CGTCACGCGC) generated using back-calculation of the nuclear Overhauser effect spectra, a distance geometry algorithm and constrained molecular dynamics.

  1990cites this paper
• Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus.

  1990cites this paper
• Crystallization of oligonucleotides and their complexes with antitumor drugs

  1990cites this paper
• Crystal and solution structures of the oligonucleotide d(ATGCGCAT)2: a combined X-ray and NMR study.

  1990cites this paper
• The crystal structure of d(GTACGTAC) at 2.25 A resolution: are the A-DNA's always unwound approximately 10 degrees at the C-G steps?

  1990cites this paper
• Molecular Recognition of DNA Minor Groove Binding Drugs

  1990cites this paper
• Structural studies of protein–nucleic acid interaction: the sources of sequence-specific binding

  1990cites this paper
• Mode of interaction of the zinc finger protein TFIIIA with a 5S RNA gene of Xenopus.

  1990cites this paper
• The effects of disrupting 5S RNA helical structures on the binding of Xenopus transcription factor IIIA.

  1990cites this paper
• Solution conformations of protein-binding DNA sequences: Characterization by vibrational spectroscopy and energy minimization procedures

  1990cites this paper
• Laser raman studies on the conformation and interactions of DNA in crystals an in solution

  1989cites this paper
• Reply to Dr. Chuprina's Comments.

  1989cites this paper
• Molecular structure of an A-DNA decamer d(ACCGGCCGGT).

  1989cites this paper
• Factors regulating the transcription of eukaryotic protein coding genes and their mechanism of action — A review

  1989cites this paper
• Conformational variations in d(TGACGTCA) and its reverse sequence d(ACTGCAGT): a joint circular dichroism and nuclear magnetic resonance study.

  1989cites this paper
• Calicheamicin gamma 1I and DNA: molecular recognition process responsible for site-specificity.

  1989cites this paper
• Structural variation in d(CTCTAGAG). Implications for protein-DNA interactions.

  1989cites this paper
• Molecular Structure of the Netropsin-d(CGCGATATCGCG) Complex: DNA Conformation in an Alternating AT Segment

  1989cites this paper
• DNA binding by proteins.

  1988cites this paper
• Putative elements in the vicinity of viral transcription initiation sites.

  1988cites this paper
• “Zinc Fingers”: A Novel Motif for Nucleic Acid Binding

  1988cites this paper
• Base sequence effects in double‐helical DNA. III. Average properties of curved dna

  1988cites this paper
• Base Sequence Effects in Curved and Rodlike DNA

  1988cites this paper
• Recent studies of DNA in the crystal.

  1988cites this paper
• The intrinsic curvature of DNA in solution.

  1988cites this paper
• Mapping the binding site of aflatoxin B1 in DNA: molecular modeling of the binding sites for the N(7)-guanine adduct of aflatoxin B1 in different DNA sequences.

  1988cites this paper
• Characteristics of the Watson‐Crick type hydrogen‐bonded DNA base pairs: An ab initio molecular orbital study

  1988cites this paper
• Base sequence effects in double‐helical DNA. II. Configurational statistics of rodlike chains

  1988cites this paper
• An ab initio molecular orbital study on the sequence-dependency of DNA conformation: an evaluation of intra- and inter-strand stacking interaction energy.

  1988cites this paper
• Base sequence effects in double helical DNA. I. Potential energy estimates of local base morphology.

  1987cites this paper
• DNA sequence-directed nucleosome reconstitution on 5S RNA genes of Xenopus laevis

  1987influential citation
• Hydration of oligonucleotides in crystals

  1987cites this paper
• The bending of DNA in nucleosomes and its wider implications.

  1987cites this paper
• DNA Structure: Current Results from Single Crystal X-Ray Diffraction Studies

  1987cites this paper
• Yeast HAP1 activator competes with the factor RC2 for binding to the upstream activation site UAS1 of the CYC1 gene.

  1987cites this paper
• The 5S gene internal control region is B-form both free in solution and in a complex with TFIIIA

  1987cites this paper
• The potentially Z-DNA-forming sequence d(GTGTACAC) crystallizes as A-DNA.

  1987cites this paper
• A model for the interaction of nucleic acids with transcription factor IIIA

  1987cites this paper
• Yeast HAP1 activator binds to two upstream activation sites of different sequence.

  1987cites this paper
• Structure, dynamics, and thermodynamics of mismatched DNA oligonucleotide duplexes d(CCCAGGG)2 and d(CCCTGGG)2.

  1987cites this paper
• Nucleic acid model building: the multiple backbone solutions associated with a given base morphology.

  1987cites this paper
• Sequence-specific positioning of core histones on an 860 base-pair DNA. Experiment and theory.

  1987cites this paper
• NMR studies of backbone-alkylated DNA: duplex stability, absolute stereochemistry, and chemical shift anomalies of prototypal isopropyl phosphotriester modified octanucleotides, (Rp,Rp)- and (Sp,Sp)-(d-[GGA(iPr)ATTCC])2 and -(d-[GGAA(iPr)TTCC])2.

  1987cites this paper
• The Molecular Structure of Base Pair Mismatches

  1987cites this paper
• Sequence periodicities in chicken nucleosome core DNA.

  1986cites this paper
• Gene regulation: Fingers and DNA half-turns

  1986cites this paper
• Mapping of the sites of protection on a 5 S RNA gene by the Xenopus transcription factor IIIA. A model for the interaction.

  1986cites this paper