In Situ Hi-C Library Preparation for Plants to Study Their Three-Dimensional Chromatin Interactions on a Genome-Wide Scale.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Methods in molecular biology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Materials Science, Environmental Science

• Identifiers
  DOI 10.1007/978-1-4939-7125-1_11PMID 28623585
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Comparison of Hi-C results using in-solution versus in-nucleus ligation

  2015cited by this paper
• Genome-wide analysis of local chromatin packing in Arabidopsis thaliana

  2015cited by this paper
• High-quality genome (re)assembly using chromosomal contact data

  2014cited by this paper
• Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis.

  2014cited by this paper
• A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

  2014cited by this paper
• Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila.

  2014cited by this paper
• Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

  2013cited by this paper
• Three-dimensional folding and functional organization principles of the Drosophila genome.

  2012cited by this paper
• Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

  2009cited by this paper
• An evaluation of 3C-based methods to capture DNA interactions

  2007cited by this paper
• Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

  2006cited by this paper
• Isolation of Arabidopsis nuclei and measurement of gene transcription rates using nuclear run-on assays

  2006cited by this paper
• Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions

  2006cited by this paper
• Capturing Chromosome Conformation

  2002cited by this paper
• Specific and reversible inhibition of the blunt end joining activity of the T4 DNA ligase.

  1981cited by this paper

• Distinct genomic architectures but the same gene underlie the convergent evolution of a plant supergene

  2025cites this paper
• Chromosome-level genome assembly of the autotetraploid yellow pitaya provides novel insights into evolution of trait patterning in pitaya species with different ploidy

  2025cites this paper
• Genome-wide characterization of the GmLUX binding preferences and its epigenic features in the soybean genome

  2025cites this paper
• HiChIP for Plant Tissues.

  2025cites this paper
• A designer synthetic chromosome fragment functions in moss

  2024cites this paper
• Multiple strategies, including 6mA methylation, affecting plant alternative splicing in allopolyploid peanut

  2024cites this paper
• Enzyme Repertoires and Genomic Insights into Lycium barbarum Pectin Polysaccharide Biosynthesis

  2024cites this paper
• Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation

  2024cites this paper
• Decoding the chromatin accessibility in Andrographis paniculata genome, a case study of genome-wide investigation of the cis-regulatory elements in medicinal plants

  2024cites this paper
• Genomic rearrangements and evolutionary changes in 3D chromatin topologies in the cotton tribe (Gossypieae)

  2023cites this paper
• TapHi-C for profiling genome-wide chromosome conformation capture.

  2023cites this paper
• Polymorphic inverted repeats near coding genes impact chromatin topology and phenotypic traits in Arabidopsis thaliana.

  2023influential citation
• Tough Tissue Hi-C.

  2022cites this paper
• Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis

  2022cites this paper
• Polymorphic Inverted Repeats near coding genes impact chromatin topology and phenotypic traits in Arabidopsis thaliana

  2022cites this paper
• Isolation of Boechera stricta Developing Embryos for Hi-C.

  2022cites this paper
• Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis.

  2022cites this paper
• Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype

  2021cites this paper
• Altered chromatin architecture and gene expression during polyploidization and domestication of soybean.

  2021cites this paper
• Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

  2021cites this paper
• Weak interactions in higher-order chromatin organization

  2020cites this paper
• Hi-C protocol for analysis of plant nuclear chromatin interactions

  2020cites this paper
• An expedient survey and characterization of the soybean JAGGED 1 (GmJAG1) transcription factor binding preference in the soybean genome by modified ChIPmentation on soybean protoplasts.

  2020cites this paper
• Study of Cell-Type-Specific Chromatin Organization: In Situ Hi-C Library Preparation for Low-Input Plant Materials.

  2020cites this paper
• In Situ Hi-C for Plants: An Improved Method to Detect Long-Range Chromatin Interactions.

  2019cites this paper
• Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

  2017cites this paper
• Development of three-dimensional genome sequencing technology

  year unknowncites this paper