Outlier loci highlight the direction of introgression in oaks

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Molecular Ecology

• Publication date

  2013-01-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/mec.12125PMID 23190431
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2011influential reference
• Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

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• HYBRIDIZATION, SPECIES COLLAPSE, AND SPECIES REEMERGENCE AFTER DISTURBANCE TO PREMATING MECHANISMS OF REPRODUCTIVE ISOLATION

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  2010influential reference
• Application of single nucleotide polymorphisms to non‐model species: a technical review

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• Detecting loci under selection in a hierarchically structured population

  2009influential reference
• Divergent selection and heterogeneous genomic divergence

  2009influential reference
• Hybridization between Quercus robur and Q. petraea in a mixed oak stand in Denmark

  2009influential reference
• Species relative abundance and direction of introgression in oaks

  2009influential reference
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• genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

  2006influential reference
• hybridlab (version 1.0): a program for generating simulated hybrids from population samples

  2006influential reference
• Adaptation and speciation: what can F(st) tell us?

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• Comparison of single-nucleotide polymorphisms and microsatellites in inference of population structure

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• Species distinction in Irish populations of Quercus petraea and Q. robur: morphological versus molecular analyses.

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• Efficiency of model‐based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci

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• INVITED REVIEW: Using genome scans of DNA polymorphism to infer adaptive population divergence

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• Genome Scanning for Interspecific Differentiation Between Two Closely Related Oak Species [Quercus robur L. and Q. petraea (Matt.) Liebl.]

  2004influential reference
• Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis

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• Genetic assignment methods for the direct, real‐time estimation of migration rate: a simulation‐based exploration of accuracy and power

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• Informativeness of genetic markers for inference of ancestry.

  2003influential reference
• Plant introductions, hybridization and gene flow.

  2003cited by this paper
• Gene flow, adaptive population divergence and comparative population structure across loci

  2003cited by this paper
• The power and promise of population genomics: from genotyping to genome typing

  2003cited by this paper
• Hybridization as a mechanism of invasion in oaks

  2003influential reference
• Genetic variability at neutral markers, quantitative trait land trait in a subdivided population under selection.

  2003cited by this paper
• Is FST obsolete?

  2002cited by this paper
• AFLP markers demonstrate local genetic differentiation between two indigenous oak species [Quercus robur L. and Quercus petraea (Matt.) Liebl.] in Flemish populations

  2002cited by this paper
• Leaf morphological differentiation between Quercus robur and Quercus petraea is stable across western European mixed oak stands

  2002influential reference
• Asymmetrical crossing barriers in angiosperms

  2001cited by this paper
• Distinguishing migration from isolation: a Markov chain Monte Carlo approach.

  2001cited by this paper
• Taxonomy: Species status of hybridizing oaks

  2000cited by this paper
• Inference of population structure using multilocus genotype data.

  2000influential reference
• Pollen dispersal inferred from paternity analysis in a mixed oak stand of Quercus robur L. and Q. petraea (Matt.) Liebl.

  1999cited by this paper
• Evaluating gene flow using selected markers: a case study.

  1998cited by this paper
• Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species

  1998cited by this paper
• Genetic signatures of interpopulation dispersal.

  1998cited by this paper
• Natural Hybridization and Evolution

  1997cited by this paper
• Chloroplast DNA footprints of postglacial recolonization by oaks.

  1997cited by this paper
• Detection of genomic regions differentiating two closely related oak species Quercus petraea (Matt.) Liebl. and Quercus robur L.

  1997cited by this paper
• Estimating ancestral population parameters.

  1997cited by this paper
• Evaluating loci for use in the genetic analysis of population structure

  1996cited by this paper
• Comparison of genetic differentiation in maritime pine (Pinus pinaster Ait.) estimated using isozyme, total protein and terpenic loci

  1995cited by this paper
• Microsatellite analysis of population structure in Canadian polar bears

  1995cited by this paper
• Results of species hybridization with Quercus robur L and Quercus petraea (Matt) Liebl

  1993cited by this paper
• THE GENETIC STRUCTURE OF THE HYBRID ZONE BETWEEN THE FIRE‐BELLIED TOADS BOMBINA BOMBINA AND B. VARIEGATA: COMPARISONS BETWEEN TRANSECTS AND BETWEEN LOCI

  1991cited by this paper
• Inbreeding coefficients and coalescence times.

  1991cited by this paper
• Gene genealogies and the coalescent process.

  1990cited by this paper
• Estimates of selection and gene flow from measures of cline width and linkage disequilibrium in heliconius hybrid zones.

  1990cited by this paper
• Fifty years of evolution: essays in honour of John Maynard Smith.

  1987cited by this paper
• The barrier to genetic exchange between hybridising populations

  1986cited by this paper
• ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

  1984cited by this paper
• The genetic basis of hybrid inviability in the grasshopper Podisma pedestris

  1981cited by this paper
• Analysis of gene diversity in subdivided populations.

  1973cited by this paper
• THE ASSESSMENT OF THE TAXONOMIC STATUS OF MIXED OAK (QUERCUS spp.) POPULATIONS

  1965cited by this paper
• VARIATION OF SOME DIAGNOSTIC CHARACTERS OF THE SESSILE AND PEDUNCULATE OAKS AND THEIR HYBRIDS IN SCOTLAND

  1963cited by this paper
• Genetical Structure of Populations

  1950influential reference
• Genetical Structure of Populations

  1950cited by this paper
• Evolution in Mendelian Populations.

  1931cited by this paper

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• Weak coupling among barrier loci and waves of neutral and adaptive introgression across an expanding hybrid zone

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  2021cites this paper
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  2015cites this paper
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  2014cites this paper
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  2014cites this paper
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  2014influential citation
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  2014cites this paper
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  2013cites this paper
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