CheckShift improved: fast chemical shift reference correction with high accuracy

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Journal of Biomolecular NMR

• Publication date

  2009-07-03

• Fields of study

  Biology, Medicine, Chemistry, Computer Science

• Identifiers
  DOI 10.1007/s10858-009-9330-2PMID 19575298
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• SimShiftDB; local conformational restraints derived from chemical shift similarity searches on a large synthetic database

  2009cited by this paper
• Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencing

  2009cited by this paper
• A CTP-dependent archaeal riboflavin kinase forms a bridge in the evolution of cradle-loop barrels.

  2007cited by this paper
• CheckShift: automatic correction of inconsistent chemical shift referencing

  2007cited by this paper
• SimShiftDB: Chemical-Shift-Based Homology Modeling

  2007cited by this paper
• Accurate prediction of protein torsion angles using chemical shifts and sequence homology

  2006cited by this paper
• The HAMP domain structure implies helix rotation in transmembrane signaling.

  2006cited by this paper
• PREDITOR: a web server for predicting protein torsion angle restraints

  2006cited by this paper
• Common Evolutionary Origin of Swapped-Hairpin and Double-Psi β Barrels

  2006cited by this paper
• The Holo-form of the Nucleotide Binding Domain of the KdpFABC Complex from Escherichia coli Reveals a New Binding Mode*

  2006cited by this paper
• Common evolutionary origin of swapped-hairpin and double-psi beta barrels.

  2006cited by this paper
• The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition.

  2005cited by this paper
• Deubiquitinating function of ataxin-3: insights from the solution structure of the Josephin domain.

  2005cited by this paper
• Combining prediction of secondary structure and solvent accessibility in proteins

  2005cited by this paper
• Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications

  2005cited by this paper
• A simple method to adjust inconsistently referenced 13C and 15N chemical shift assignments of proteins

  2005cited by this paper
• STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

  2004cited by this paper
• NMR studies on the substrate-binding domains of the thermosome: structural plasticity in the protrusion region.

  2004cited by this paper
• The Xplor-NIH NMR molecular structure determination package.

  2003cited by this paper
• RefDB: A database of uniformly referenced protein chemical shifts

  2003cited by this paper
• The PredictProtein server

  2003cited by this paper
• Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles

  2002cited by this paper
• Probability‐based protein secondary structure identification using combined NMR chemical‐shift data

  2002cited by this paper
• Protein secondary structure prediction based on position-specific scoring matrices.

  1999cited by this paper
• Protein backbone angle restraints from searching a database for chemical shift and sequence homology

  1999cited by this paper
• The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element.

  1999cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• Chemical shifts and three-dimensional protein structures

  1995cited by this paper
• Knowledge‐based protein secondary structure assignment

  1995cited by this paper
• The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

  1992cited by this paper
• A relational database for sequence-specific protein NMR data

  1991cited by this paper
• BIOINFORMATICS ORIGINAL PAPER Structural bioinformatics SimShift: Identifying structural similarities from NMR chemical shifts

  year unknowncited by this paper

• NMR assignments of the N-terminal signaling domain of the TonB-dependent outer membrane transducer PupB

  2018cites this paper
• NMR assignments of the N-terminal signaling domain of the TonB-dependent outer membrane transducer PupB

  2017cites this paper
• Bioinformatics advances biology and medicine by turning big data troves into knowledge

  2017cites this paper
• Conformationally selective multidimensional chemical shift ranges in proteins from a PACSY database purged using intrinsic quality criteria

  2016cites this paper
• An overview of tools for the validation of protein NMR structures

  2013cites this paper
• Overview on the use of NMR to examine protein structure.

  2011cites this paper
• Functional binding of hexanucleotides to 3C protease of hepatitis A virus

  2011cites this paper
• Quantitative use of chemical shifts for the modeling of protein complexes

  2011cites this paper
• Interpreting protein chemical shift data.

  2011cites this paper
• SHIFTX2: significantly improved protein chemical shift prediction

  2011influential citation