RNA sequencing analysis of transcriptional change in the freshwater mussel Elliptio complanata after environmentally relevant sodium chloride exposure

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Environmental Toxicology and Chemistry

• Publication date

  2017-09-01

• Fields of study

  Biology, Medicine, Chemistry, Environmental Science

• Identifiers
  DOI 10.1002/etc.3774PMID 28224655
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

  2016cited by this paper
• Signatures of selection in the three‐spined stickleback along a small‐scale brackish water – freshwater transition zone

  2015cited by this paper
• River chloride trends in snow-affected urban watersheds: increasing concentrations outpace urban growth rate and are common among all seasons.

  2015cited by this paper
• Massive expansion and functional divergence of innate immune genes in a protostome

  2015cited by this paper
• From the laboratory to the wild: salinity-based genetic differentiation of the European sea bass (Dicentrarchus labrax) using gene-associated and gene-independent microsatellite markers

  2015cited by this paper
• A genome scan for candidate genes involved in the adaptation of turbot (Scophthalmus maximus).

  2015cited by this paper
• Evaluation of Statistical Treatments of Left-Censored Environmental Data Using Coincident Uncensored Data Sets. II. Group Comparisons.

  2015cited by this paper
• Transcriptomic Analysis of the Mussel Elliptio complanata Identifies Candidate Stress-Response Genes and an Abundance of Novel or Noncoding Transcripts

  2014influential reference
• Transcriptomic Profiling of Differential Responses to Drought in Two Freshwater Mussel Species, the Giant Floater Pyganodon grandis and the Pondhorn Uniomerus tetralasmus

  2014influential reference
• On non-detects in qPCR data

  2014cited by this paper
• The use of stress‐70 proteins in physiology: a re‐appraisal

  2013cited by this paper
• The effects of salinity exposure on multiple life stages of a common freshwater mussel, Elliptio complanata

  2013influential reference
• Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

  2013cited by this paper
• Ensembl 2013

  2012cited by this paper
• The oyster genome reveals stress adaptation and complexity of shell formation

  2012cited by this paper
• Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

  2012cited by this paper
• Environmental selection on transcriptome‐derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

  2012cited by this paper
• Insights into bilaterian evolution from three spiralian genomes

  2012cited by this paper
• Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

  2012cited by this paper
• Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:Unionidae), using an RNA-seq-based approach

  2012cited by this paper
• Exploiting sparseness in de novo genome assembly

  2012cited by this paper
• Fast gapped-read alignment with Bowtie 2

  2012cited by this paper
• The collagen family.

  2011cited by this paper
• Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus)

  2011influential reference
• Environmentally induced oxidative stress in aquatic animals.

  2011cited by this paper
• PUMPING IONS: RAPID PARALLEL EVOLUTION OF IONIC REGULATION FOLLOWING HABITAT INVASIONS

  2011cited by this paper
• SignalP 4.0: discriminating signal peptides from transmembrane regions

  2011cited by this paper
• Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes

  2011cited by this paper
• Evidence of feminization in wild Elliptio complanata mussels in the receiving waters downstream of a municipal effluent outfall.

  2011cited by this paper
• CDD: a Conserved Domain Database for the functional annotation of proteins

  2010cited by this paper
• Structural cuticular proteins from arthropods: annotation, nomenclature, and sequence characteristics in the genomics era.

  2010cited by this paper
• Gene ontology analysis for RNA-seq: accounting for selection bias

  2010cited by this paper
• edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

  2009cited by this paper
• Open Access Method

  2009cited by this paper
• The NCBI BioSystems database

  2009cited by this paper
• The Sequence Alignment/Map format and SAMtools

  2009cited by this paper
• [''R"--project for statistical computing].

  2008cited by this paper
• Fish 'n' chips: the use of microarrays for aquatic toxicology.

  2007cited by this paper
• Transcriptomic approach to the study of osmoregulation in the European eel Anguilla anguilla.

  2007cited by this paper
• Cellular response to hyperosmotic stresses.

  2007cited by this paper
• Differential expression of gill Na+,K+-ATPaseα - and β-subunits, Na+,K+,2Cl- cotransporter and CFTR anion channel in juvenile anadromous and landlocked Atlantic salmon Salmo salar

  2007cited by this paper
• Taurine transporter from the giant Pacific oyster Crassostrea gigas: function and expression in response to hyper- and hypo-osmotic stress

  2007cited by this paper
• Gene-expression variation within and among human populations.

  2007cited by this paper
• Differential expression of gill Na+,K+-ATPase alpha- and beta-subunits, Na+,K+,2Cl- cotransporter and CFTR anion channel in juvenile anadromous and landlocked Atlantic salmon Salmo salar.

  2007cited by this paper
• Molecular biomarkers of oxidative stress in aquatic organisms in relation to toxic environmental pollutants.

  2006cited by this paper
• Increased salinization of fresh water in the northeastern United States.

  2005cited by this paper
• The Freshwater Mussel (Elliptio complanata) as a Sentinel Species: Vitellogenin and Steroid Receptors1

  2005cited by this paper
• Regulation of expression of two aquaporin homologs in the intestine of the European eel: effects of seawater acclimation and cortisol treatment.

  2005cited by this paper
• Environmental Impact of Chemical Deicers – A Review

  2005cited by this paper
• The multifunctional fish gill: dominant site of gas exchange, osmoregulation, acid-base regulation, and excretion of nitrogenous waste.

  2005cited by this paper
• Changes in gene expression in gills of the euryhaline killifish Fundulus heteroclitus after abrupt salinity transfer.

  2004cited by this paper
• Bilaterian Phylogeny Based on Analyses of a Region of the Sodium–Potassium ATPase β-Subunit Gene

  2004cited by this paper
• The Global Decline of Nonmarine Mollusks

  2004cited by this paper
• Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource

  2004cited by this paper
• mRNA Decay in Prokaryotes and Eukaryotes: Different Approaches to a Similar Problem

  2004cited by this paper
• Effect of salinity change on free amino acid content in Pacific oyster.

  2003cited by this paper
• Taurine: new implications for an old amino acid.

  2003cited by this paper
• Reciprocal functions of the Drosophila yellow and ebony proteins in the development and evolution of pigment patterns.

  2002cited by this paper
• Identification of Drosophila melanogaster yellow-f and yellow-f2 proteins as dopachrome-conversion enzymes.

  2002cited by this paper
• Na(+), Cl(-), Ca(2+) and Zn(2+) transport by fish gills: retrospective review and prospective synthesis.

  2002cited by this paper
• Variation in gene expression within and among natural populations

  2002cited by this paper
• InterProScan - an integration platform for the signature-recognition methods in InterPro

  2001cited by this paper
• Cotransporter Abundance and Location in Atlantic Salmon: Effects of Seawater and Smolting

  2001cited by this paper
• PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS

  2001cited by this paper
• Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays.

  2000cited by this paper
• KEGG: Kyoto Encyclopedia of Genes and Genomes

  2000cited by this paper
• KEGG: Kyoto Encyclopedia of Genes and Genomes

  1999cited by this paper
• Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology.

  1999cited by this paper
• A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences

  1998influential reference
• Mantle Biopsy: A Technique for Nondestructive Tissue-Sampling of Freshwater Mussels

  1995cited by this paper
• Hydrolytic elimination of a mutagenic nucleotide, 8-oxodGTP, by human 18-kilodalton protein: sanitization of nucleotide pool.

  1992cited by this paper
• Relationships between the Partitioning of Trace Metals in Sediments and Their Accumulation in the Tissues of the Freshwater Mollusc Elliptio complanata in a Mining Area

  1984cited by this paper
• Quality criteria for water

  1979cited by this paper
• The Initiation and Control of Free Amino Acid Regulation of Cell Volume in Salinity-Stressed Marine Bivalves

  1973cited by this paper
• THE OSMOTIC FUNCTION OF AMINO ACIDS AND TAURINE IN THE MUSSEL, MYTILUS EDULIS.

  1963cited by this paper

• Revealing the Impact of Polystyrene Nanoplastics on Gill Tissues of the Intertidal Clam, Gafrarium Divaricatum (Gmelin, 1791) using Transcriptomics Approach

  2026cites this paper
• Navigating salt gradients: Transcriptomic strategies of bivalves for surviving salinity stress in aquatic systems.

  2026cites this paper
• Population-specific phenotypic plasticity of endangered bivalves in response to extreme events.

  2026cites this paper
• In vitro culture media type impacts gene expression in the freshwater mussel Lampsilis siliquoidea (Bivalvia: Unionidae)

  2025cites this paper
• Vegetation-Driven Changes in Soil Salinity Ions and Microbial Communities Across Tidal Flat Reclamation

  2025cites this paper
• The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825

  2024cites this paper
• Lethal and Sub-lethal Implications of Sodium Chloride Exposure for Adult Unionid Mussel Species: Eurynia dilatata and Lasmigona costata

  2023cites this paper
• PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793

  2023cites this paper
• The gill transcriptome of threatened European freshwater mussels

  2022cites this paper
• Dodder-transmitted mobile systemic signals activate a salt-stress response characterized by a transcriptome change in Citrus sinensis

  2022cites this paper
• Gill transcriptome analysis reveals the molecular response to the acute low-salinity stress in Cyclina sinensis

  2021cites this paper
• Freshwater mussels (Unionidae) brought into captivity exhibit up-regulation of genes involved in stress and energy metabolism

  2021cites this paper
• A weight‐of‐evidence approach for defining thermal sensitivity in a federally endangered species

  2020cites this paper
• Identifying conserved polychaete molecular markers of metal exposure: Comparative analyses using the Alitta virens (Annelida, Lophotrochozoa) transcriptome.

  2020cites this paper
• Molluscan aquaporins: an overview, with some notes on their role in the entry into aestivation in gastropods

  2020influential citation
• Transcriptome and Gene Coexpression Network Analyses of Two Wild Populations Provides Insight into the High-Salinity Adaptation Mechanisms of Crassostrea ariakensis

  2019cites this paper
• The Status of Mussel Health Assessment and a Path Forward

  2019cites this paper
• Transcriptional changes measured in rice roots after exposure to arsenite-contaminated sediments

  2017cites this paper