Quantitative species-level ecology of reef fish larvae via metabarcoding

No abstract is available for this paper.

• Publication year

  2018

• Venue

  Nature Ecology & Evolution

• Publication date

  2018-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/s41559-017-0413-2PMID 29255297
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• New record of the spiny pufferfish, Tylerius spinosissimus (Regan, 1908), from Israel, Gulf of Aqaba, Red Sea (Actinopterygii: Tetraodontiformes: Tetraodontidae)

  2016cited by this paper
• A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea

  2016cited by this paper
• Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

  2015cited by this paper
• Taxonomy and systematics of larval Indo-Pacific fishes: a review of progress since 1981

  2015cited by this paper
• DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

  2015cited by this paper
• Identifying the ichthyoplankton of a coral reef using DNA barcodes

  2015cited by this paper
• DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

  2014cited by this paper
• High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

  2013cited by this paper
• Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

  2013cited by this paper
• AN ANNOTATED LIST OF DEEP-SEA FISHES COLLECTED IN THE NORTHERN RED SEA, GULF OF AQABA

  2013cited by this paper
• A REVIEW OF THE INDO-WEST PACIFIC CONGRID FISHES OF GENERA RHYNCHOCONGER AND BATHYCONGRUS WITH THE DESCRIPTION OF THREE NEW SPECIES

  2013cited by this paper
• A REVIEW OF THE FISH GENUS PARASCOLOPSIS (NEMIPTERIDAE) OF THE WESTERN INDIAN OCEAN, WITH DESCRIPTION OF A NEW SPECIES FROM THE NORTHERN RED SEA

  2013cited by this paper
• Evaluating the Accuracy of Morphological Identification of Larval Fishes by Applying DNA Barcoding

  2013cited by this paper
• Four new species of coral gobies (Teleostei: Gobiidae: Gobiodon), with comments on their relationships within the genus

  2013cited by this paper
• The microbiome explored: recent insights and future challenges

  2013cited by this paper
• TWO NEW FLATFISH RECORDS FROM THE RED SEA, AN INDOPACIFIC SAMARID (SAMARISCUS INORNATUS) AND THE EUROPEAN PLAICE (PLEURONECTES PLATESSA)

  2013cited by this paper
• MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline

  2013cited by this paper
• MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

  2013cited by this paper
• Role of propagule pressure in colonization success: disentangling the relative importance of demographic, genetic and habitat effects

  2013cited by this paper
• Detection of Bioactive Compounds in the Mucus Nets of Dendropoma maxima, Sowerby 1825 (Prosobranch Gastropod Vermetidae, Mollusca)

  2013cited by this paper
• A coral reef refuge in the Red Sea

  2013cited by this paper
• Towards next‐generation biodiversity assessment using DNA metabarcoding

  2012cited by this paper
• Quantitative assessment of mitochondrial DNA copies from whole genome sequencing

  2012cited by this paper
• Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs

  2012cited by this paper
• Characterization of the transcriptome of an ecologically important avian species, the Vinous-throated Parrotbill Paradoxornis webbianus bulomachus (Paradoxornithidae; Aves)

  2012cited by this paper
• Next-Generation Sequencing for Rodent Barcoding: Species Identification from Fresh, Degraded and Environmental Samples

  2012cited by this paper
• Fiji: an open-source platform for biological-image analysis

  2012cited by this paper
• Shrimp-gobies in the southern Gulf of Aqaba (Red Sea)

  2012cited by this paper
• DNA barcoding of marine metazoa.

  2011cited by this paper
• Critical thresholds and tangible targets for ecosystem-based management of coral reef fisheries

  2011cited by this paper
• Variation in repeat length and heteroplasmy of the mitochondrial DNA control region along a core–edge gradient in the eastern spadefoot toad (Pelobates syriacus)

  2011cited by this paper
• First record of the Spiny blaasop Tylerius spinosissimus (Regan, 1908) (Tetraodontidae) from the Turkish coasts

  2011cited by this paper
• Causes of decoupling between larval supply and settlement and consequences for understanding recruitment and population connectivity

  2010cited by this paper
• Orientation Cage and Release Experiments with Migratory Wheatears (Oenanthe oenanthe) in Scandinavia and Greenland: The Importance of Visual Cues

  2010cited by this paper
• pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

  2010cited by this paper
• Vertical distribution and ontogenetic "migration" in coral reef fish larvae

  2010cited by this paper
• The Fishes of the Red Sea—Reappraisal and Updated Checklist

  2010cited by this paper
• Identifying coral reef fish larvae through DNA barcoding: a test case with the families Acanthuridae and Holocentridae.

  2010cited by this paper
• Larval dispersal and marine population connectivity.

  2009cited by this paper
• Beyond Baselines: Rethinking Priorities for Ocean Conservation

  2009cited by this paper
• FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

  2009cited by this paper
• Variability in the trophic role of coral reef fish larvae in the oceanic plankton

  2009cited by this paper
• Genetic identification and color descriptions of early life-history stages of Belizean Phaeoptyx and Astrapogon (Teleostei: Apogonidae) with Comments on identification of adult Phaeoptyx

  2009cited by this paper
• Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

  2008cited by this paper
• Descending to the twilight-zone: changes in coral reef fish assemblages along a depth gradient down to 65 m

  2008cited by this paper
• The Multinational Bathymetric Survey: Northern Gulf of 'Aqaba/Elat Poster

  2008cited by this paper
• Redescriptions of the Indo-Pacific atherinid fishes Atherinomorus forskalii, Atherinomorus lacunosus, and Atherinomorus pinguis

  2007cited by this paper
• Coral Reefs Under Rapid Climate Change and Ocean Acidification

  2007cited by this paper
• Handbook of Scaling Methods in Aquatic Ecology: Measurement, Analysis, Simulation

  2007cited by this paper
• Coupled Biological and Physical Models: Present Capabilities and Necessary Developments for Future Studies of Population Connectivity

  2007cited by this paper
• Universal primer cocktails for fish DNA barcoding

  2007cited by this paper
• bold: The Barcode of Life Data System (http://www.barcodinglife.org)

  2007cited by this paper
• Long-term effects of the 1998 coral bleaching event on reef fish assemblages

  2006cited by this paper
• The determinants of species richness of a relatively young coral‐reef ichthyofauna

  2006cited by this paper
• An inexpensive, automation-friendly protocol for recovering high-quality DNA

  2006cited by this paper
• DNA barcoding Australia's fish species

  2005cited by this paper
• Early stages of Atlantic fishes : an identification guide for the western central North Atlantic

  2005cited by this paper
• Confronting the coral reef crisis

  2004cited by this paper
• Fish Fauna of the Jordanian Coast, Gulf of Aqaba, Red Sea

  2004cited by this paper
• Direct evidence of a biophysical retention mechanism for coral reef fish larvae

  2004cited by this paper
• The larvae of Indo-Pacific coastal fishes : an identification guide to marine fish larvae

  2004cited by this paper
• Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator.

  2004cited by this paper
• Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

  2003cited by this paper
• Long-Term Region-Wide Declines in Caribbean Corals

  2003cited by this paper
• Planktonic Layers: Physical and Biological Interactions on the Small Scale

  2003cited by this paper
• The biology, behaviour and ecology of the pelagic, larval stage of coral-reef fishes

  2002cited by this paper
• Community structure and biogeography of shore fishes in the Gulf of Aqaba, Red Sea

  2002cited by this paper
• CHAPTER 7 – Larval Dispersal and Retention and Consequences for Population Connectivity

  2002cited by this paper
• RECRUITMENT LIMITATION, POPULATION REGULATION, AND LARVAL CONNECTIVITY IN REEF FISH METAPOPULATIONS

  2002cited by this paper
• Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs

  2002cited by this paper
• UPENEUS DAVIDAROMI, A NEW DEEP WATER GOATFISH (OSTEICHTHYES, MULLIDAE) FROM THE RED SEA

  2001cited by this paper
• Evaluation of PCR-Generated Chimeras, Mutations, and Heteroduplexes with 16S rRNA Gene-Based Cloning

  2001cited by this paper
• Molecular Systematics, 2nd ed.

  1997cited by this paper
• Vertical mixing and coral death in the Red Sea following the eruption of Mount Pinatubo

  1995cited by this paper
• Review of the moray eels (Anguilliformes: muraenidae) of the Red Sea

  1995cited by this paper
• An Empirical Test of Recruitment Limitation in a Coral Reef Fish

  1994cited by this paper
• Diversity of fish larvae in the Florida Keys: results from SEFCAR

  1994cited by this paper
• New development in the MOCNESS, an apparatus for sampling zooplankton and micronekton

  1985cited by this paper
• Replication of animal mitochondrial DNA.

  1982cited by this paper

• Ontogenic coloration patterns of the clown triggerfish Balistoides conspicillum (Tetraodontiformes: Balistidae)

  2026cites this paper
• Post-Larval Processes Reduce the Diversity of Coral Reef Fish Communities.

  2025cites this paper
• Spatial dispersal of environmental DNA particles in lentic and marine ecosystems: An overview and synthesis

  2025cites this paper
• Basin-wide morphology and metabarcoding-based comparison of ichthyoplankton diversity and community structure in the Gulf of Mexico

  2025cites this paper
• Overcoming life stage‐centric biases illuminates arthropod diversity, systematics and biology

  2024cites this paper
• A new species of marine goby Trimma (Teleostei:Gobiidae) from Taiwan.

  2024cites this paper
• Coupling and de-coupling of the El Niño Southern Oscillation to the supply of larval fishes to benthic populations in the Hawaiian Islands

  2024cites this paper
• First report on the morphological traits of Cociella crocodilus larva identified through amplicon sequencing

  2024cites this paper
• Mitochondrial DNA-based reassessment of Antennablennius Fowler (Blenniidae: Salariini) from the north-western Indian Ocean, with resurrection of A. persicus (Regan).

  2024cites this paper
• Multi-marker DNA metabarcoding for precise species identification in ichthyoplankton samples

  2024cites this paper
• The lionfishes: Comparative development of Pterois volitans, Dendrochirus barberi, and D. hemprichi (Scorpaeniformes: Scorpaenidae: Pteroinae) and discrimination of their early life stages from non-pteroine scorpaenid genera in the Western North Atlantic.

  2024cites this paper
• DNA metabarcoding as a tool for characterising the spatio-temporal distribution of planktonic larvae in the phylum Echinodermata

  2024cites this paper
• Identifying early life stages of Great Lakes fishes using a metabarcoding approach

  2023cites this paper
• Ectopleura crocea (Cnidaria: Hydrozoa) Identified as a Predator of Pelagic Fish Eggs through Cytochrome c Oxidase I Metabarcoding

  2023cites this paper
• DNA metabarcoding assessment of Neotropical ichthyoplankton communities is marker‐dependent

  2023cites this paper
• Otolith characterization and integrative species identification of adult mesopelagic fishes from the western North Atlantic Ocean

  2023cites this paper
• Qualitative and quantitative DNA metabarcoding assessment of Neotropical ichthyoplankton communities is marker-dependent

  2023cites this paper
• Ichthyoplankton metabarcoding: An efficient tool for early detection of invasive species establishment

  2023cites this paper
• Evaluation of DNA metabarcoding for identifying fish eggs: a case study on the West Florida Shelf

  2023cites this paper
• Marine top secrets: Ichthyoplankton in surface water uncover hidden knowledge on fish diversity and distribution

  2023cites this paper
• Contribution of integrative taxonomy of ichthyoplankton to knowledge on mesopelagic fish biodiversity in the Northeastern Mediterranean

  2023cites this paper
• Investigations into the ancestry of the Grape-eye Seabass (Hemilutjanus macrophthalmos) reveal novel limits and relationships for the Acropomatiformes (Teleostei: Percomorpha)

  2022cites this paper
• Unraveling the Drifting Larval Fish Community in a Large Spawning Ground in the Middle Pearl River Using DNA Barcoding

  2022cites this paper
• Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding

  2022cites this paper
• Identifying fish eggs and larvae: from classic methodologies to DNA metabarcoding

  2022cites this paper
• In Silico Evaluation of the Taxonomic Resolution and Coverage of the COI Region and Alternative Barcode Markers for Echinoderms

  2022cites this paper
• Unwanted Guest Continues its Northern Journey in the Aegean Sea: Pterois miles (Bennett, 1828)

  2022cites this paper
• DNA barcoding reveals the temporal community composition of drifting fish eggs in the lower Hongshui River, China

  2021cites this paper
• Quantitative assessment of fish larvae community composition in spawning areas using metabarcoding of bulk samples.

  2021cites this paper
• Formalin-Fixed Fish Larvae Could Be Effectively Identified by DNA Barcodes: A Case Study on Thousands of Specimens in South China Sea

  2021cites this paper
• Species-level ichthyoplankton dynamics for 97 fishes in two major river basins of the Amazon using quantitative metabarcoding.

  2021cites this paper
• Comparison of Larval Fish Detections Using Morphology-Based Taxonomy versus High-Throughput Sequencing for Invasive Species Early Detection.

  2021cites this paper
• Explaining Recruitment Stochasticity at a Species’ Range Margin

  2021cites this paper
• Does structural change in the zooplankton community affect larval fish feeding in anthropogenically disturbed tropical waters?

  2021cites this paper
• Fish Diversity Monitored by Environmental DNA in the Yangtze River Mainstream

  2021cites this paper
• Molecular identification and temporal genetic differentiation of Cyprinus carpio (Cypriniformes: Cyprinidae) eggs attached on artificial fish nests

  2021cites this paper
• Rapid quantitative assessment of fish larvae community composition using metabarcoding

  2020cites this paper
• Temporal species-level composition of larvae resources in the lower Pearl River drainage and implications for species' reproductive cycles.

  2020cites this paper
• GenBank's reliability is uncertain for biodiversity researchers seeking species-level assignment for eDNA.

  2020cites this paper
• Morphology of a Larval Hammerjaw Omosudis lowii Günther 1887 (Aulopiformes, Omosudidae) Identified by Partial Mitochondrial 12S rRNA Gene Analysis

  2020cites this paper
• Morphological and genetic identification of formalin-fixed gobioid larvae and description of postflexion larvae of Paragunnellichthys sp. and Ctenogobiops feroculus

  2020cites this paper
• Seasonal Variation and Assessment of Fish Resources in the Yangtze Estuary Based on Environmental DNA

  2020cites this paper
• Metabarcoding reveals different zooplankton communities in northern and southern areas of the North Sea

  2020cites this paper
• A drop in the ocean: Monitoring fish communities in spawning areas using environmental DNA

  2020cites this paper
• Assessing species diversity of Coral Triangle artisanal fisheries: A DNA barcode reference library for the shore fishes retailed at Ambon harbor (Indonesia)

  2020cites this paper
• Marine DNA Metabarcoding

  2019cites this paper
• The Indo-Pacific Sergeant Abudefduf vaigiensis (Quoy & Gaimard, 1825) (Perciformes: Pomacentridae) in Libya, South-Central Mediterranean Sea

  2019influential citation
• Using DNA Barcodes to Aid the Identification of Larval Fishes in Tropical Estuarine Waters (Malacca Straits, Malaysia).

  2019cites this paper
• Current practice in plankton metabarcoding: optimization and error management

  2019cites this paper
• The genetics and genomics of marine fish invasions: a global review

  2019cites this paper
• An update on advances in new developing DNA conjugation diagnostics and ultra-resolution imaging technologies: Possible applications in medical and biotechnological utilities.

  2019cites this paper
• The interaction between suction feeding performance and prey escape response determines feeding success in larval fish

  2019cites this paper
• Fishes and Connectivity of Red Sea Coral Reefs

  2019cites this paper
• Prepared for the future: A strong signal of evolution toward the adult benthic niche during the pelagic stage in Labrid fishes

  2019cites this paper
• Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding

  2018cites this paper
• The hidden half: ecology and evolution of cryptobenthic fishes on coral reefs

  2018cites this paper
• Checklist of the Red Sea Fishes with delineation of the Gulf of Suez, Gulf of Aqaba, endemism and Lessepsian migrants.

  2018cites this paper
• Morphology and evolution of bioluminescent organs in the glowbellies (Percomorpha: Acropomatidae) with comments on the taxonomy and phylogeny of Acropomatiformes

  2018cites this paper
• Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

  2018cites this paper
• Biophysical Simulations Support Schooling Behavior of Fish Larvae Throughout Ontogeny

  2018cites this paper
• Prophage-Driven Genomic Structural Changes Promote Bartonella Vertical Evolution

  2018cites this paper
• Advancing DNA Barcoding and Metabarcoding Applications for Plants Requires Systematic Analysis of Herbarium Collections—An Australian Perspective

  2018cites this paper
• Oceanography and Marine Biology An Annual Review, Volume 61

  year unknowncites this paper