Linkage disequilibrium, persistence of phase, and effective population size in Spanish local beef cattle breeds assessed through a high-density single nucleotide polymorphism chip.

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Journal of Animal Science

• Publication date

  2016-07-01

• Fields of study

  Agricultural and Food Sciences, Medicine, Biology

• Identifiers
  DOI 10.2527/jas.2016-0425PMID 27482665
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Genetic diversity and divergence among Spanish beef cattle breeds assessed by a bovine high-density SNP chip.

  2015cited by this paper
• gplots: Various R Programming Tools for Plotting Data

  2015cited by this paper
• Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle

  2014cited by this paper
• R: A language and environment for statistical computing.

  2014influential reference
• Monitoring changes in the demographic and genealogical structure of the main Spanish local beef breeds.

  2014cited by this paper
• High Density LD-Based Structural Variations Analysis in Cattle Genome

  2014cited by this paper
• Genome-wide Analysis of Genetic Diversity in Autochthonous Spanish Populations of Beef Cattle

  2014cited by this paper
• The extent of linkage disequilibrium in beef cattle breeds using high-density SNP genotypes

  2014cited by this paper
• Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

  2013cited by this paper
• Study of whole genome linkage disequilibrium in Nellore cattle

  2013cited by this paper
• Regular Exercise, Subjective Wellbeing, and Internalizing Problems in Adolescence: Causality or Genetic Pleiotropy?

  2012cited by this paper
• Estimation of linkage disequilibrium in four US pig breeds

  2012cited by this paper
• Linkage disequilibrium in Angus, Charolais, and Crossbred beef cattle

  2012cited by this paper
• Genomic selection in admixed and crossbred populations.

  2010cited by this paper
• The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

  2010cited by this paper
• Linkage disequilibrium and historical effective population size in the Thoroughbred horse.

  2010influential reference
• A high density linkage map of the bovine genome

  2009cited by this paper
• The pattern of linkage disequilibrium in German Holstein cattle.

  2009cited by this paper
• A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals.

  2009influential reference
• High-resolution haplotype block structure in the cattle genome

  2009cited by this paper
• A whole-genome assembly of the domestic cow, Bos taurus

  2009cited by this paper
• Genomic selection: prediction of accuracy and maximisation of long term response

  2009cited by this paper
• Construction of a dense SNP map for bovine chromosome 6 to assist the assembly of the bovine genome sequence.

  2008cited by this paper
• Linkage Disequilibrium and Persistence of Phase in Holstein–Friesian, Jersey and Angus Cattle

  2008cited by this paper
• Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel

  2008cited by this paper
• Whole genome linkage disequilibrium maps in cattle

  2007cited by this paper
• Linkage Disequilibrium in Related Breeding Lines of Chickens

  2007cited by this paper
• Genetic and Haplotypic Structure in 14 European and African Cattle Breeds

  2007cited by this paper
• PLINK: a tool set for whole-genome association and population-based linkage analyses.

  2007influential reference
• Recent human effective population size estimated from linkage disequilibrium.

  2007influential reference
• Measuring the extent of linkage disequilibrium in commercial pig populations.

  2006cited by this paper
• A comparison of phasing algorithms for trios and unrelated individuals.

  2006cited by this paper
• Estimation of effective population sizes from data on genetic markers

  2005cited by this paper
• Novel multilocus measure of linkage disequilibrium to estimate past effective population size.

  2003cited by this paper
• Patterns of linkage disequilibrium in the human genome

  2002cited by this paper
• Patterns of linkage disequilibrium in the human genome

  2002cited by this paper
• Multifactorial genetics: The use of molecular genetics in the improvement of agricultural populations

  2002cited by this paper
• Linkage disequilibrium in humans: models and data.

  2001cited by this paper
• Prediction of total genetic value using genome-wide dense marker maps.

  2001influential reference
• Prospects for whole-genome linkage disequilibrium mapping of common disease genes

  1999cited by this paper
• Removal of blood from laboratory mammals and birds

  1994cited by this paper
• Removal of blood from laboratory mammals and birds. First report of the BVA/FRAME/RSPCA/UFAW Joint Working Group on Refinement.

  1993cited by this paper
• Linkage disequilibrium and homozygosity of chromosome segments in finite populations.

  1971cited by this paper
• Linkage disequilibrium in finite populations

  1968cited by this paper
• Genetics Selection Evolution Accuracy of Breeding Values of 'unrelated' Individuals Predicted by Dense Snp Genotyping

  year unknowncited by this paper

• Evaluation of genetic differences between two autochthonous Spanish cattle breeds

  2025cites this paper
• Accuracy of Genomic Predictions Cross Populations with Different Linkage Disequilibrium Patterns

  2024influential citation
• Runs of Homozygosity Islands in Autochthonous Spanish Cattle Breeds

  2024cites this paper
• Genome and chromosome wide association studies for growth traits in Simmental and Simbrah cattle

  2022cites this paper
• Linkage disequilibrium, population stratification and patterns of ancestry in Simmental cattle

  2020cites this paper
• Metafounder approach for single-step genomic evaluations of Red Dairy cattle.

  2020cites this paper
• Estimation of Linkage Disequilibrium and Effective Population Size in Three Italian Autochthonous Beef Breeds

  2020cites this paper
• Mapping Recombination Rate on the Autosomal Chromosomes Based on the Persistency of Linkage Disequilibrium Phase Among Autochthonous Beef Cattle Populations in Spain

  2019influential citation
• Genome-Wide SNP Data Revealed the Extent of Linkage Disequilibrium, Persistence of Phase and Effective Population Size in Purebred and Crossbred Buffalo Populations

  2019influential citation
• Evaluation of Linkage Disequilibrium, Effective Population Size and Haplotype Block Structure in Chinese Cattle

  2019cites this paper
• Genetic architecture of the persistency of linkage disequilibrium across seven Spanish beef cattle populations

  2018cites this paper
• Performance of genomic selection under a single‐step approach in autochthonous Spanish beef cattle populations

  2017cites this paper
• The Bos taurus–Bos indicus balance in fertility and milk related genes

  2017cites this paper
• Evaluation of the potential use of a meta-population for genomic selection in autochthonous beef cattle populations.

  2017cites this paper
• Genomic differentiation between Asturiana de los Valles, Avileña-Negra Ibérica, Bruna dels Pirineus, Morucha, Pirenaica, Retinta and Rubia Gallega cattle breeds.

  2017cites this paper