New evidence for the recent divergence of Devil's Hole pupfish and the plausibility of elevated mutation rates in endangered taxa

No abstract is available for this paper.

• Publication year

  2018

• Venue

  Molecular Ecology

• Publication date

  2018-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/mec.14404PMID 29148600
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2013influential reference
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  2012influential reference
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  2011influential reference
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  2010cited by this paper
• Evolution of the mutation rate.

  2010influential reference
• Threatened fishes of the world: Cyprinodon diabolis (Wales, 1930)

  2010influential reference
• Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times.

  2009influential reference
• Why do species vary in their rate of molecular evolution?

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  2009cited by this paper
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• Bayesian Inference of Species Trees from Multilocus Data

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  2008influential reference
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  2008cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2000cited by this paper
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  2000cited by this paper
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  1999cited by this paper
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  1998cited by this paper
• Determinants of rate variation in mammalian DNA sequence evolution

  1996cited by this paper
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  1993cited by this paper
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  1991cited by this paper
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  1989cited by this paper
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  1987cited by this paper
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  year unknowninfluential reference

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