An automated GCxGC‐TOF‐MS protocol for batch‐wise extraction and alignment of mass isotopomer matrixes from differential 13C‐labelling experiments: a case study for photoautotrophic‐mixotrophic grown Chlamydomonas reinhardtii cells

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Journal of Basic Microbiology

• Publication date

  2009-02-01

• Fields of study

  Biology, Medicine, Chemistry, Environmental Science

• Identifiers
  DOI 10.1002/jobm.200800337PMID 19206143
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances.

  2008cited by this paper
• Metabolomics- and Proteomics-Assisted Genome Annotation and Analysis of the Draft Metabolic Network of Chlamydomonas reinhardtii

  2008cited by this paper
• Retention index thresholds for compound matching in GC-MS metabolite profiling.

  2008cited by this paper
• Integration of metabolomics and proteomics in molecular plant physiology--coping with the complexity by data-dimensionality reduction.

  2008cited by this paper
• Metabolomics : methods and protocols

  2007cited by this paper
• The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions

  2007cited by this paper
• Visualization and analysis of molecular data.

  2007cited by this paper
• Metabolic networks in motion: 13C-based flux analysis

  2006cited by this paper
• Hydrogen production by sulfur-deprived Chlamydomonas reinhardtii under photoautotrophic conditions

  2006cited by this paper
• GMD@CSB.DB: the Golm Metabolome Database

  2005cited by this paper
• Metabolite Profiling of Chlamydomonas reinhardtii under Nutrient Deprivation1[OA]

  2005cited by this paper
• Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds

  2004cited by this paper
• Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co‐regulation in biochemical networks

  2004cited by this paper
• Differential metabolic networks unravel the effects of silent plant phenotypes.

  2004cited by this paper
• Role of Chloroplast Protein Kinase Stt7 in LHCII Phosphorylation and State Transition in Chlamydomonas

  2003cited by this paper
• Metabolomics in systems biology.

  2003cited by this paper
• The intricate pathway of starch biosynthesis and degradation in the monocellular alga Chlamydomonas reinhardtii

  2002cited by this paper
• Circadian rhythms in microalgae.

  2001cited by this paper
• Metabolite profiling for plant functional genomics

  2000cited by this paper
• An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data

  1999cited by this paper
• Incorporation of 18O into oxalic, l-threonic and l-tartaric acids during cleavage of l-ascorbic and 5-keto-d-gluconic acids in plants

  1997cited by this paper
• Numerical Recipes in C The Art of Scientific Computing

  1995cited by this paper
• Optimization and testing of mass spectral library search algorithms for compound identification

  1994cited by this paper
• Numerical Recipes in C: The Art of Scientific Computing

  1989cited by this paper
• Metabolism of l-Threonic Acid in Rumex x acutus L. and Pelargonium crispum (L.) L'Hér.

  1982cited by this paper

• Chemical profile, cytoprotection study and anxiolytic potential of Lentinus edodes extracts.

  2025cites this paper
• Systematization of the Gas-Chromatographic Parameters of Trimethylsilyl Derivatives of Amino Acids

  2024cites this paper
• L-Glyceraldehyde Inhibits Neuroblastoma Cell Growth via a Multi-Modal Mechanism on Metabolism and Signaling

  2024cites this paper
• Elucidation of the structural features of low-rank coals using two-dimensional gas chromatography/time-of-flight mass spectrometry (GC×GC/TOF-MS)

  2024cites this paper
• An engineered culture vessel and flow system to improve the in vitro analysis of volatile organic compounds

  2023cites this paper
• Metabolic flux analysis: a comprehensive review on sample preparation, analytical techniques, data analysis, computational modelling, and main application areas

  2022cites this paper
• Alcohol-sourced acetate reduces T cell filamentous actin branching and migration

  2022cites this paper
• Interactions Between Carbon Metabolism and Photosynthetic Electron Transport in a Chlamydomonas reinhardtii Mutant Without CO2 Fixation by RuBisCO

  2022cites this paper
• Alcohol-sourced acetate impairs T cell function by promoting cortactin acetylation

  2022cites this paper
• Extension of Plant Phenotypes by the Foliar Microbiome.

  2021cites this paper
• Inhibiting PHGDH with NCT-503 reroutes glucose-derived carbons into the TCA cycle, independently of its on-target effect

  2021cites this paper
• Author Correction: Proteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy

  2020cites this paper
• Inhibiting phosphoglycerate dehydrogenase counteracts chemotherapeutic efficacy against MYCN‐amplified neuroblastoma

  2020cites this paper
• Thermodynamic modeling of comprehensive two dimensional gas chromatography isovolatility curves for second dimension retention indices based analyte identification.

  2020cites this paper
• Proteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy

  2019cites this paper
• Maf links Neuregulin1 signaling to cholesterol synthesis in myelinating Schwann cells

  2018cites this paper
• Metabolomics in Plant Stress Physiology.

  2018cites this paper
• Dynamic metabolic profiling together with transcription analysis reveals salinity-induced starch-to-lipid biosynthesis in Chlamydomonas sp

  2018cites this paper
• Non-canonical HIF-1 stabilization is essential for intestinal tumorigenesis

  2018cites this paper
• Retinol saturase coordinates liver metabolism by regulating ChREBP activity

  2017cites this paper
• Optimizing 2D gas chromatography mass spectrometry for robust tissue, serum and urine metabolite profiling

  2017cites this paper
• The MYC mRNA 3′‐UTR couples RNA polymerase II function to glutamine and ribonucleotide levels

  2017cites this paper
• Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism Chlamydomonas reinhardtii

  2017cites this paper
• Dynamic metabolic profiling together with transcription analysis reveals salinity-induced starch-to-lipid biosynthesis in alga Chlamydomonas sp. JSC4

  2017cites this paper
• Stage‐specific metabolic features of differentiating neurons: Implications for toxicant sensitivity

  2017cites this paper
• The B-cell receptor controls fitness of MYC-driven lymphoma cells via GSK3β inhibition

  2017cites this paper
• Synthetic lethal treatment strategies for tumor cell senescence

  2017cites this paper
• Omics in Chlamydomonas for Biofuel Production.

  2016cites this paper
• Quantitative Analysis of Cancer Metabolism: From pSIRM to MFA.

  2016cites this paper
• Lipids in Plant and Algae Development

  2016cites this paper
• IFNs Modify the Proteome of Legionella-Containing Vacuoles and Restrict Infection Via IRG1-Derived Itaconic Acid

  2016cites this paper
• Development and Application of Improvements to the Tile-based Fisher Ratio Method and Fundamental Instrument Considerations for Non-targeted Analysis using Two-dimensional Gas Chromatography

  2016cites this paper
• Annexin A1 sustains tumor metabolism and cellular proliferation upon stable loss of HIF1A

  2015cites this paper
• Tile-based Fisher ratio analysis of comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry (GC × GC-TOFMS) data using a null distribution approach.

  2015cites this paper
• Type I and II IFNs modify the proteome of bacterial vacuoles to restrict infections via IRG1

  2015cites this paper
• Glycerol from novel strains of halophytic microalgae

  2014cites this paper
• Rationales and Approaches for Studying Metabolism in Eukaryotic Microalgae

  2014cites this paper
• Decoding the dynamics of cellular metabolism and the action of 3-bromopyruvate and 2-deoxyglucose using pulsed stable isotope-resolved metabolomics

  2014cites this paper
• System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation

  2014cites this paper
• Deoxyxylulose 5-Phosphate Synthase Controls Flux through the Methylerythritol 4-Phosphate Pathway in Arabidopsis1[C][W][OPEN]

  2014cites this paper
• Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii[C][W][OPEN]

  2014cites this paper
• Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism[W]

  2014cites this paper
• Interpretation of comprehensive two-dimensional gas chromatography data using advanced chemometrics

  2014cites this paper
• Methods of discovery-based and targeted metabolite analysis by comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry detection.

  2014cites this paper
• Gas Chromatography Coupled to Mass Spectrometry for Metabolomics Research

  2014cites this paper
• Mass spectrometry based hyphenated techniques for microalgal and mammalian metabolomics.

  2014cites this paper
• Pulsed stable isotope-resolved metabolomic studies of cancer cells.

  2014cites this paper
• Towards understanding organ-derived metabolic signatures in blood

  2014cites this paper
• Medicago Truncatula Root and Shoot Metabolomics: Protocol for the Investigation of the Primary Carbon and Nitrogen Metabolism Based on GC–MS

  2013cites this paper
• Synthetic lethal metabolic targeting of cellular senescence in cancer therapy

  2013cites this paper
• Extreme metabolomics: developing a high-performance computational pipeline for high-resolution LC–MS data sets

  2013cites this paper
• Comprehensive two-dimensional gas chromatography in metabolomics

  2012cites this paper
• A Review of Chemometrics Applied to Comprehensive Two-dimensional Separations from 2008–2010

  2012cites this paper
• Stable Isotope-Assisted Metabolomics for Network-Wide Metabolic Pathway Elucidation

  2012cites this paper
• Mathematical Modeling of Plant Metabolism―From Reconstruction to Prediction

  2012cites this paper
• Isotopic labeling-assisted metabolomics using LC–MS

  2012cites this paper
• Proteome dynamics and early salt stress response of the photosynthetic organism Chlamydomonas reinhardtii

  2012cites this paper
• Review of chemometric analysis techniques for comprehensive two dimensional separations data.

  2012cites this paper
• Deregulated MYC expression induces dependence upon AMPK-related kinase 5

  2012cites this paper
• Integrative systems biology: an attempt to describe a simple weed.

  2012cites this paper
• Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry

  2011cites this paper
• Metabolomics of carotenoid accumulation in Dunaliella salina

  2011cites this paper
• Data Processing, Metabolomic Databases and Pathway Analysis

  2011cites this paper
• Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology.

  2011cites this paper
• Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

  2011cites this paper
• From Models to Crop Species: Caveats and Solutions for Translational Metabolomics

  2011cites this paper
• Metabolomics for functional genomics, systems biology, and biotechnology.

  2010cites this paper
• Plant metabolomics--meeting the analytical challenges of comprehensive metabolite analysis.

  2010cites this paper
• Metabolomics: an integral technique in systems biology.

  2010cites this paper
• A metabolic signature of the beneficial interaction of the endophyte paenibacillus sp. isolate and in vitro-grown poplar plants revealed by metabolomics.

  2009cites this paper
• ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii

  2009cites this paper