iLoops: a protein-protein interaction prediction server based on structural features

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Bioinform.

• Publication date

  2013-09-15

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/bioinformatics/btt401PMID 23842807
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Understanding protein-protein interactions using local structural features.

  2013cited by this paper
• Computational prediction of protein-protein interactions

  2012cited by this paper
• Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments.

  2012cited by this paper
• Struct2Net: a web service to predict protein–protein interactions using a structure-based approach

  2010cited by this paper
• The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

  2010cited by this paper
• Biana: a software framework for compiling biological interactions and analyzing networks

  2010cited by this paper
• The WEKA data mining software: an update

  2009cited by this paper
• The Negatome database: a reference set of non-interacting protein pairs

  2009cited by this paper
• High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

  2008cited by this paper
• An experimentally derived confidence score for binary protein-protein interactions

  2008cited by this paper
• Computational Prediction of Protein–Protein Interactions

  2008cited by this paper
• Data growth and its impact on the SCOP database: new developments

  2007cited by this paper
• Choosing negative examples for the prediction of protein-protein interactions

  2006cited by this paper
• PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs

  2006cited by this paper
• InterPreTS: protein Interaction Prediction through Tertiary Structure

  2003influential reference
• ArchDB: automated protein loop classification as a tool for structural genomics

  2003cited by this paper
• A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

  2003cited by this paper
• Predictome: a database of putative functional links between proteins

  2002cited by this paper
• Twilight zone of protein sequence alignments.

  1999cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• A Bayesian networks approach for predicting protein-protein interactions from genomic data Materials and methods Datasets

  year unknowncited by this paper

• Main methods and tools for peptide development based on protein-protein interactions (PPIs).

  2025cites this paper
• Clinical Significance of Acyl-CoA Dehydrogenase Short Chain and Its Anti-tumor Role in Hepatocellular Carcinoma by Inhibiting Canonical Wnt/β-Catenin Pathway

  2025cites this paper
• The overexpression of OsMed 37_6, a mediator complex subunit enhances salt stress tolerance in rice

  2024cites this paper
• Statistical analysis of sequential motifs at biologically relevant protein-protein interfaces

  2024cites this paper
• Unveiling the structure and interactions of SOG1, a NAC domain transcription factor: An in-silico perspective

  2024cites this paper
• SOG1 and BRCA1 interdependently regulate RAD54 expression for repairing salinity-induced DNA double-strand breaks in Arabidopsis.

  2024cites this paper
• Exploiting ensemble learning and negative sample space for predicting extracellular matrix receptor interactions

  2023cites this paper
• Building Protein-Protein Interaction Graph Database Using Neo4j.

  2023cites this paper
• Protein-Protein Interaction Network Exploration Using Cytoscape.

  2023cites this paper
• Protein‐protein interaction networks as miners of biological discovery

  2022cites this paper
• A review of bioinformatics tools and web servers in different microarray platforms used in cancer research.

  2022cites this paper
• In silico modelling and interactive profiling of BPH resistance NBS-LRR proteins with salivary specific proteins of rice planthoppers

  2022cites this paper
• The novel activity of Argonautes in intron splicing: A transcriptome-wide survey in plants.

  2022cites this paper
• Computationally Reconstructed Interactome of Bradyrhizobium diazoefficiens USDA110 Reveals Novel Functional Modules and Protein Hubs for Symbiotic Nitrogen Fixation

  2021cites this paper
• Prediction of Protein-Protein Binding Affinities from Unbound Protein Structures.

  2021cites this paper
• In silico modeling and interactive profiling of BPH resistant R genes with elicitor molecules of rice planthoppers

  2021cites this paper
• ProteinPrompt: a webserver for predicting protein–protein interactions

  2021cites this paper
• Prediction, Analysis, Visualization, and Storage of Protein–Protein Interactions Using Computational Approaches

  2021cites this paper
• Delayed Comparison and Apriori Algorithm (DCAA): A Tool for Discovering Protein–Protein Interactions From Time-Series Phosphoproteomic Data

  2020cites this paper
• Using collections of structural models to predict changes of binding affinity caused by mutations in protein–protein interactions

  2020cites this paper
• Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.

  2020cites this paper
• Evolution of Sequence-based Bioinformatics Tools for Protein-protein Interaction Prediction

  2020cites this paper
• Molecular dynamics simulations for genetic interpretation in protein coding regions: where we are, where to go and when

  2019cites this paper
• Protein-Protein Interaction Databases

  2019cites this paper
• Investigating Machine Learning Based Prediction of Protein Interactions

  2019cites this paper
• Comparative analysis of differential proteome-wide protein-protein interaction network of Methanobrevibacter ruminantium M1

  2019cites this paper
• Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes.

  2018cites this paper
• Analyses of Protein Interaction Networks Using Computational Tools.

  2018cites this paper
• Protein-Protein Interaction Tools

  2018cites this paper
• Protease target prediction via matrix factorization

  2018cites this paper
• iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments.

  2017cites this paper
• On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures

  2017cites this paper
• CaMELS: In silico prediction of calmodulin binding proteins and their binding sites

  2017cites this paper
• Known unknowns of cardiolipin signaling: The best is yet to come.

  2017cites this paper
• Prediction of Protein‐Protein Interactions

  2017cites this paper
• Computational prediction of host-pathogen protein-protein interactions

  2017cites this paper
• Predicting Protein-Protein Interactions from the Molecular to the Proteome Level.

  2016cites this paper
• InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

  2016cites this paper
• Prediction and characterization of protein-protein interaction network in Bacillus licheniformis WX-02

  2016cites this paper
• Prediction of protein-protein interactions using chaos game representation and wavelet transform via the random forest algorithm.

  2015cites this paper
• In Silico Approaches Assisting the Rational Design of Low Molecular Weight Protein–Protein Interaction Modulators

  2015cites this paper
• Advances in template-based protein docking by utilizing interfaces towards completing structural interactome.

  2015cites this paper
• Structural Modeling of GR Interactions with the SWI/SNF Chromatin Remodeling Complex and C/EBP.

  2015cites this paper
• Combine and conquer: methods for multitask learning in biology and language

  2015cites this paper
• A putative role of the Sup35p C-terminal domain in the cytoskeleton organization during yeast mitosis.

  2014cites this paper
• ArchDB 2014: structural classification of loops in proteins

  2013cites this paper