De novo transcriptome assembly and RNA-Seq expression analysis in blood from beluga whales of Bristol Bay, AK.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Marine Genomics

• Publication date

  2017-10-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.margen.2017.08.001PMID 28802692
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the northern Gulf of Mexico and southeastern U.S. Atlantic coasts.

  2018cited by this paper
• A comparison of blood nitric oxide metabolites and hemoglobin functional properties among diving mammals.

  2017cited by this paper
• ggplot2 - Elegant Graphics for Data Analysis (2nd Edition)

  2017cited by this paper
• When the brain goes diving: transcriptome analysis reveals a reduced aerobic energy metabolism and increased stress proteins in the seal brain

  2016cited by this paper
• Potential natural and anthropogenic impediments to the conservation and recovery of cook inlet beluga whales, Delphinapterus leucas

  2016cited by this paper
• Navigating under sea ice promotes rapid maturation of diving physiology and performance in beluga whales

  2016cited by this paper
• Effects of Physiological Factors and Seasonal Variations on Hematology and Plasma Biochemistry of Beluga Whales (Delphinapterus leucas) Managed in Pingtung, Taiwan

  2016cited by this paper
• RNA-Seq analysis of seasonal and individual variation in blood transcriptomes of healthy managed bottlenose dolphins

  2016cited by this paper
• KEGG: new perspectives on genomes, pathways, diseases and drugs

  2016cited by this paper
• Alaska marine mammal stock assessments, 2015

  2016cited by this paper
• Assessment of immune status using blood transcriptomics and potential implications for global health.

  2015cited by this paper
• A Systematic Review of Changes in Marine Mammal Health in North America, 1972-2012: The Need for a Novel Integrated Approach

  2015cited by this paper
• A nutrigenomic approach to detect nutritional stress from gene expression in blood samples drawn from Steller sea lions.

  2015cited by this paper
• Widespread seasonal gene expression reveals annual differences in human immunity and physiology

  2015cited by this paper
• BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

  2015cited by this paper
• Transcriptome analysis of northern elephant seal (Mirounga angustirostris) muscle tissue provides a novel molecular resource and physiological insights

  2015cited by this paper
• Seasonal changes in gene expression represent cell-type composition in whole blood.

  2014cited by this paper
• Baseline hearing abilities and variability in wild beluga whales (Delphinapterus leucas)

  2014cited by this paper
• Trimmomatic: a flexible trimmer for Illumina sequence data

  2014cited by this paper
• Meteorin-like is a hormone that regulates immune-adipose interactions to increase beige fat thermogenesis.

  2014cited by this paper
• Blow Collection as a Non-Invasive Method for Measuring Cortisol in the Beluga (Delphinapterus leucas)

  2014cited by this paper
• Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples

  2014cited by this paper
• Characterization of the peripheral blood transcriptome in a repeated measures design using a panel of healthy individuals.

  2014cited by this paper
• Machine learning approaches to investigate the impact of PCBs on the transcriptome of the common bottlenose dolphin (Tursiops truncatus).

  2014cited by this paper
• PCBs are associated with altered gene transcript profiles in arctic Beluga Whales (Delphinapterus leucas).

  2014cited by this paper
• EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

  2013cited by this paper
• Minke whale genome and aquatic adaptation in cetaceans

  2013cited by this paper
• Leptin in Whales: Validation and Measurement of mRNA Expression by Absolute Quantitative Real-Time PCR

  2013cited by this paper
• Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal

  2013cited by this paper
• De novo Assembly of the Indo-Pacific Humpback Dolphin Leucocyte Transcriptome to Identify Putative Genes Involved in the Aquatic Adaptation and Immune Response

  2013cited by this paper
• WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

  2013cited by this paper
• Spatial and temporal trends of persistent organic pollutants and mercury in beluga whales (Delphinapterus leucas) from Alaska.

  2013cited by this paper
• Evolution of hemoglobin and its genes.

  2012cited by this paper
• Gene transcription in sea otters (Enhydra lutris); development of a diagnostic tool for sea otter and ecosystem health

  2012cited by this paper
• Fast gapped-read alignment with Bowtie 2

  2012cited by this paper
• Health status, infection and disease in California sea lions (Zalophus californianus) studied using a canine microarray platform and machine-learning approaches.

  2012cited by this paper
• SEASONAL HEMATOLOGY AND SERUM CHEMISTRY OF WILD BELUGA WHALES (DELPHINAPTERUS LEUCAS) IN BRISTOL BAY, ALASKA, USA

  2012cited by this paper
• RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

  2011cited by this paper
• PCB-associated changes in mRNA expression in killer whales (Orcinus orca) from the NE Pacific Ocean.

  2011cited by this paper
• The iPlant Collaborative: Cyberinfrastructure for Plant Biology

  2011cited by this paper
• Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome

  2011cited by this paper
• Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

  2011cited by this paper
• Plac8 is an inducer of C/EBPβ required for brown fat differentiation, thermoregulation, and control of body weight.

  2011cited by this paper
• Substitutions in woolly mammoth hemoglobin confer biochemical properties adaptive for cold tolerance

  2010cited by this paper
• A multi-trial diagnostic tool in fin whale (Balaenoptera physalus) skin biopsies of the Pelagos Sanctuary (Mediterranean Sea) and the Gulf of California (Mexico).

  2010cited by this paper
• A longitudinal study of gene expression in healthy individuals

  2009cited by this paper
• High-throughput functional annotation and data mining with the Blast2GO suite

  2008cited by this paper
• A transcriptomic analysis of the stress induced by capture–release health assessment studies in wild dolphins (Tursiops truncatus)

  2008cited by this paper
• Quantitation of leukocyte gene expression in cetaceans.

  2008cited by this paper
• Contaminant-associated disruption of vitamin A and its receptor (retinoic acid receptor alpha) in free-ranging harbour seals (Phoca vitulina).

  2007cited by this paper
• Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics

  2007cited by this paper
• CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

  2007cited by this paper
• The peripheral-blood transcriptome: new insights into disease and risk assessment.

  2007cited by this paper
• PCB-Related Alteration of Thyroid Hormones and Thyroid Hormone Receptor Gene Expression in Free-Ranging Harbor Seals (Phoca vitulina)

  2006cited by this paper
• WebGestalt: an integrated system for exploring gene sets in various biological contexts

  2005cited by this paper
• Exploration of neuroendocrine and immune gene expression in peripheral blood mononuclear cells.

  2004cited by this paper
• The Arctic: a sink for mercury

  2004cited by this paper
• Stress and Marine Mammals

  2001cited by this paper
• BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT

  1999cited by this paper
• Phylogeography, population structure and dispersal patterns of the beluga whale Delphinapterus leucas in the western Nearctic revealed by mitochondrial DNA

  1997cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• Global fractionation and cold condensation of low volatility organochlorine compounds in polar regions

  1993cited by this paper
• Rubbing behaviour of belugas, Delphinapterus leucas, in a high Arctic estuary

  1992cited by this paper
• Haematological and rheological characteristics of blood in seven marine mammal species: physiological implications for diving behaviour

  1991cited by this paper
• Seasonal epidermal molt in beluga whales, Delphinapterus leucas

  1990cited by this paper
• Comparative studies of the respiratory functions of mammalian blood. X. Killer whale (Orcinus orca linnaeus) and beluga whale (Delphin apterus leucas).

  1974cited by this paper
• BIOINFORMATICS APPLICATIONS NOTE

  year unknowncited by this paper
• Genome analysis Advance Access publication February 18, 2011 B2G-FAR, a species-centered GO annotation repository

  year unknowncited by this paper
• University of Birmingham High throughput functional annotation and data mining with the Blast2GO suite

  year unknowncited by this paper

• De Novo Assembly and Characterization of the Transcriptome of an Omnivorous Camel Cricket (Tachycines meditationis)

  2023cites this paper
• Transcriptome profiling of blood from common bottlenose dolphins (Tursiops truncatus) in the northern Gulf of Mexico to enhance health assessment capabilities

  2022cites this paper
• Multi-Omics Approaches and Radiation on Lipid Metabolism in Toothed Whales

  2021cites this paper
• Species and population specific gene expression in blood transcriptomes of marine turtles

  2021cites this paper
• Functional Studies with Primary Cells Provide a System for Genome-to-Phenome Investigations in Marine Mammals.

  2020cites this paper
• Testing the Stability of Plasma Protein and Whole Blood RNA in Archived Blood of Loggerhead Sea Turtles, Caretta caretta

  2020cites this paper
• Sexual dimorphism in brain transcriptomes of Amami spiny rats (Tokudaia osimensis): a rodent species where males lack the Y chromosome

  2019cites this paper
• De novo Assembly and Annotation of the Blood Transcriptome of the Southern Elephant Seal Mirounga leonina from the South Shetland Islands, Antarctica

  2019cites this paper