Dynamic visualization of transcription and RNA subcellular localization in zebrafish

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Development

• Publication date

  2015-04-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1242/dev.118968PMID 25758462PMCID PMC4378251
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  1998cited by this paper
• High-frequency generation of transgenic zebrafish which reliably express GFP in whole muscles or the whole body by using promoters of zebrafish origin.

  1997cited by this paper
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  1995cited by this paper
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  1995cited by this paper
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  1982cited by this paper

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